/ MacFormat 1994 August / August CD.bin / Shareware / Education / MacPattern 3.2 / Help Data / Help Data.rsrc

MacOS 8.1

Win98

DOS

browse contents

view JSON data

view as text

+--------+-------------------------+-------------------------+--------+--------+
|00000000| 00 05 16 07 00 02 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000010| 00 00 00 00 00 00 00 00 | 00 02 00 00 00 09 00 00 |........|........|
|00000020| 00 32 00 00 00 20 00 00 | 00 02 00 00 00 52 00 01 |.2... ..|.....R..|
|00000030| 55 a2 4d 43 50 48 4d 43 | 70 74 01 00 00 00 00 00 |U.MCPHMC|pt......|
|00000040| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000050| 00 00 00 00 01 00 00 01 | 50 a1 00 01 4f a1 00 00 |........|P...O...|
|00000060| 05 01 00 00 00 02 0d 49 | 6e 73 69 64 65 20 4d 61 |.......I|nside Ma|
|00000070| 63 20 44 41 02 00 00 00 | 44 46 49 4c 44 4d 4f 56 |c DA....|DFILDMOV|
|00000080| 01 00 09 48 65 6c 70 20 | 44 61 74 61 02 00 00 00 |...Help |Data....|
|00000090| 4d 43 50 48 4d 43 70 74 | 00 00 00 00 00 00 00 00 |MCPHMCpt|........|
|000000a0| 00 00 00 00 4d 43 50 48 | 4d 43 70 74 00 00 00 00 |....MCPH|MCpt....|
|000000b0| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|000000c0| 00 00 00 00 aa 22 7e 40 | 00 00 00 00 00 01 55 a2 |....."~@|......U.|
|000000d0| 00 18 0a 2b 00 09 00 00 | 00 00 16 00 00 00 00 02 |...+....|........|
|000000e0| 10 49 6e 76 69 73 69 48 | 44 4d 61 69 6e 42 6f 33 |.InvisiH|DMainBo3|
|000000f0| 62 33 02 00 00 00 00 00 | 00 00 00 00 00 00 40 00 |b3......|......@.|
|00000100| 00 00 00 00 00 00 00 00 | 00 86 00 00 00 00 00 80 |........|........|
|00000110| 00 00 02 00 00 00 00 00 | 00 00 00 00 00 00 a0 51 |........|.......Q|
|00000120| 63 49 a0 59 65 5b 00 00 | 00 00 00 00 00 00 00 00 |cI.Ye[..|........|
|00000130| 00 00 00 00 00 00 00 00 | 00 00 00 00 02 2f 00 01 |........|...../..|
|00000140| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000150| 00 00 00 00 00 19 00 26 | 00 0a 01 40 01 f4 00 00 |.......&|...@....|
|00000160| 00 00 00 00 00 00 00 01 | 01 2c 04 48 65 6c 70 00 |........|.,.Help.|
|00000170| 00 00 0c 00 52 00 56 00 | f0 01 bc 27 90 55 55 00 |....R.V.|...'.UU.|
|00000180| 00 00 98 00 06 00 00 00 | 00 00 f0 01 6b 01 04 01 |........|....k...|
|00000190| a7 04 04 44 6f 6e 65 00 | 00 00 00 00 1d 01 3b 00 |...Done.|......;.|
|000001a0| ac 01 d6 00 02 2a 4e 00 | 00 00 00 00 06 00 08 01 |.....*N.|........|
|000001b0| 16 01 34 00 00 00 00 00 | 00 00 c6 01 91 00 da 01 |..4.....|........|
|000001c0| cd 04 04 4e 65 78 74 00 | 00 00 00 00 c6 01 41 00 |...Next.|......A.|
|000001d0| da 01 87 04 08 50 72 65 | 76 69 6f 75 73 00 00 00 |.....Pre|vious...|
|000001e0| 00 00 0c 01 3d 00 1b 01 | d5 88 14 53 65 6c 65 63 |....=...|...Selec|
|000001f0| 74 20 41 20 48 65 6c 70 | 20 54 6f 70 69 63 3a 00 |t A Help| Topic:.|
|00000200| 00 00 00 00 b0 01 4d 00 | c4 01 b9 88 0d 53 63 72 |......M.|.....Scr|
|00000210| 65 65 6e 20 31 20 6f 66 | 20 31 3a 00 00 00 56 00 |een 1 of| 1:...V.|
|00000220| 04 00 00 00 00 00 80 01 | 18 00 94 01 54 04 02 4f |........|....T..O|
|00000230| 4b 00 00 00 00 00 38 00 | 50 00 48 01 58 88 02 5e |K.....8.|P.H.X..^|
|00000240| 30 00 00 00 00 00 48 00 | 50 00 58 01 58 88 02 5e |0.....H.|P.X.X..^|
|00000250| 31 00 00 00 00 00 58 00 | 50 00 68 01 58 88 02 5e |1.....X.|P.h.X..^|
|00000260| 32 00 00 00 00 00 20 00 | 50 00 30 00 80 88 06 45 |2..... .|P.0....E|
|00000270| 72 72 6f 72 3a 00 00 00 | 83 0a 46 69 72 73 74 20 |rror:...|..First |
|00000280| 6d 65 6e 75 44 57 52 44 | 09 4c 61 73 74 20 6d 65 |menuDWRD|.Last me|
|00000290| 6e 75 44 57 52 44 09 6e | 75 6d 54 6f 70 69 63 73 |nuDWRD.n|umTopics|
|000002a0| 5a 43 4e 54 05 2a 2a 2a | 2a 2a 4c 53 54 43 0b 53 |ZCNT.***|**LSTC.S|
|000002b0| 63 72 65 65 6e 20 54 79 | 70 65 54 4e 41 4d 0e 52 |creen Ty|peTNAM.R|
|000002c0| 65 73 6f 75 72 63 65 20 | 73 74 61 72 74 44 57 52 |esource |startDWR|
|000002d0| 44 0c 52 65 73 6f 75 72 | 63 65 20 65 6e 64 44 57 |D.Resour|ce endDW|
|000002e0| 52 44 0b 54 6f 70 69 63 | 20 74 69 74 6c 65 50 53 |RD.Topic| titlePS|
|000002f0| 54 52 05 2a 2a 2a 2a 2a | 4c 53 54 45 00 00 03 fa |TR.*****|LSTE....|
|00000300| 4d 61 63 50 61 74 74 65 | 72 6e 20 69 73 20 6e 6f |MacPatte|rn is no|
|00000310| 74 20 61 20 6e 6f 72 6d | 61 6c 20 73 65 71 75 65 |t a norm|al seque|
|00000320| 6e 63 65 20 61 6e 61 6c | 79 73 69 73 20 70 72 6f |nce anal|ysis pro|
|00000330| 67 72 61 6d 2e 20 49 74 | 20 64 6f 65 73 20 6e 6f |gram. It| does no|
|00000340| 74 20 70 72 6f 76 69 64 | 65 20 74 68 65 20 73 74 |t provid|e the st|
|00000350| 61 6e 64 61 72 64 20 66 | 65 61 74 75 72 65 73 20 |andard f|eatures |
|00000360| 66 6f 72 2c 20 65 2e 67 | 2e 2c 20 63 6f 6d 70 6f |for, e.g|., compo|
|00000370| 73 69 74 69 6f 6e 20 61 | 6e 61 6c 79 73 69 73 2c |sition a|nalysis,|
|00000380| 20 73 65 63 6f 6e 64 61 | 72 79 20 73 74 72 75 63 | seconda|ry struc|
|00000390| 74 75 72 65 20 70 72 65 | 64 69 63 74 69 6f 6e 2c |ture pre|diction,|
|000003a0| 20 65 74 63 2e 20 49 6e | 73 74 65 61 64 2c 20 69 | etc. In|stead, i|
|000003b0| 74 20 73 75 70 70 6c 65 | 6d 65 6e 74 73 20 73 74 |t supple|ments st|
|000003c0| 61 6e 64 61 72 64 20 70 | 72 6f 67 72 61 6d 73 20 |andard p|rograms |
|000003d0| 62 79 20 6f 66 66 65 72 | 69 6e 67 20 74 6f 6f 6c |by offer|ing tool|
|000003e0| 73 20 74 68 61 74 20 63 | 61 6e 20 67 69 76 65 20 |s that c|an give |
|000003f0| 63 6c 75 65 73 20 74 6f | 20 74 68 65 20 66 75 6e |clues to| the fun|
|00000400| 63 74 69 6f 6e 73 20 6f | 66 20 6e 65 77 6c 79 20 |ctions o|f newly |
|00000410| 64 69 73 63 6f 76 65 72 | 65 64 20 70 72 6f 74 65 |discover|ed prote|
|00000420| 69 6e 73 2e 20 0d 0d 4d | 61 63 50 61 74 74 65 72 |ins. ..M|acPatter|
|00000430| 6e 20 61 6c 6c 6f 77 73 | 20 79 6f 75 20 74 6f 20 |n allows| you to |
|00000440| 75 73 65 20 74 68 65 20 | 50 52 4f 53 49 54 45 20 |use the |PROSITE |
|00000450| 61 6e 64 20 42 4c 4f 43 | 4b 53 20 64 61 74 61 62 |and BLOC|KS datab|
|00000460| 61 73 65 73 20 28 6f 72 | 20 61 6e 79 20 6f 74 68 |ases (or| any oth|
|00000470| 65 72 20 64 61 74 61 62 | 61 73 65 73 20 77 69 74 |er datab|ases wit|
|00000480| 68 20 74 68 65 20 73 61 | 6d 65 20 66 6f 72 6d 61 |h the sa|me forma|
|00000490| 74 29 20 66 6f 72 20 73 | 65 61 72 63 68 69 6e 67 |t) for s|earching|
|000004a0| 20 70 72 6f 74 65 69 6e | 20 28 61 6e 64 20 44 4e | protein| (and DN|
|000004b0| 41 29 20 73 65 71 75 65 | 6e 63 65 73 20 66 6f 72 |A) seque|nces for|
|000004c0| 20 74 68 65 20 6f 63 63 | 75 72 72 65 6e 63 65 20 | the occ|urrence |
|000004d0| 6f 66 20 6b 6e 6f 77 6e | 20 70 61 74 74 65 72 6e |of known| pattern|
|000004e0| 73 20 6f 72 20 73 69 6d | 69 6c 61 72 69 74 69 65 |s or sim|ilaritie|
|000004f0| 73 20 74 6f 20 70 72 6f | 74 65 69 6e 20 62 6c 6f |s to pro|tein blo|
|00000500| 63 6b 73 2e 20 59 6f 75 | 20 6d 61 79 20 73 65 61 |cks. You| may sea|
|00000510| 72 63 68 20 66 6f 72 20 | 61 6c 6c 20 65 6e 74 72 |rch for |all entr|
|00000520| 69 65 73 20 69 6e 20 74 | 68 65 20 64 61 74 61 62 |ies in t|he datab|
|00000530| 61 73 65 2c 20 66 6f 72 | 20 73 65 6c 65 63 74 65 |ase, for| selecte|
|00000540| 64 20 65 6e 74 72 69 65 | 73 20 6f 72 20 79 6f 75 |d entrie|s or you|
|00000550| 20 63 61 6e 20 63 72 65 | 61 74 65 20 d2 70 61 74 | can cre|ate .pat|
|00000560| 74 65 72 6e 20 73 65 74 | 73 d3 2e 20 49 6e 20 61 |tern set|s.. In a|
|00000570| 64 64 69 74 69 6f 6e 20 | 74 6f 20 69 74 73 20 73 |ddition |to its s|
|00000580| 65 61 72 63 68 69 6e 67 | 20 63 61 70 61 62 69 6c |earching| capabil|
|00000590| 69 74 69 65 73 2c 20 4d | 61 63 50 61 74 74 65 72 |ities, M|acPatter|
|000005a0| 6e 20 61 6c 73 6f 20 70 | 72 6f 76 69 64 65 73 20 |n also p|rovides |
|000005b0| 61 6e 20 69 6e 74 65 67 | 72 61 74 65 64 2c 20 70 |an integ|rated, p|
|000005c0| 6f 77 65 72 66 75 6c 20 | 64 61 74 61 62 61 73 65 |owerful |database|
|000005d0| 20 62 72 6f 77 73 65 72 | 20 74 6f 6f 6c 2e 20 49 | browser| tool. I|
|000005e0| 6e 64 69 76 69 64 75 61 | 6c 20 64 61 74 61 62 61 |ndividua|l databa|
|000005f0| 73 65 20 65 6e 74 72 69 | 65 73 20 63 61 6e 20 62 |se entri|es can b|
|00000600| 65 20 65 61 73 69 6c 79 | 20 61 63 63 65 73 73 65 |e easily| accesse|
|00000610| 64 20 61 6e 64 20 74 68 | 65 20 63 6f 6d 70 6c 65 |d and th|e comple|
|00000620| 74 65 20 69 6e 66 6f 72 | 6d 61 74 69 6f 6e 20 73 |te infor|mation s|
|00000630| 74 6f 72 65 64 20 69 6e | 20 74 68 65 20 64 61 74 |tored in| the dat|
|00000640| 61 62 61 73 65 20 63 61 | 6e 20 62 65 20 76 69 65 |abase ca|n be vie|
|00000650| 77 65 64 20 6f 6e 20 73 | 63 72 65 65 6e 2c 20 70 |wed on s|creen, p|
|00000660| 72 69 6e 74 65 64 2c 20 | 65 78 74 72 61 63 74 65 |rinted, |extracte|
|00000670| 64 20 74 6f 20 64 69 73 | 6b 20 66 69 6c 65 73 2c |d to dis|k files,|
|00000680| 20 65 74 63 2e 0d 0d 54 | 68 65 20 70 72 6f 76 69 | etc...T|he provi|
|00000690| 73 69 6f 6e 20 6f 66 20 | 6d 65 74 68 6f 64 73 20 |sion of |methods |
|000006a0| 66 6f 72 20 69 64 65 6e | 74 69 66 69 63 61 74 69 |for iden|tificati|
|000006b0| 6f 6e 20 6f 66 20 73 74 | 61 74 69 73 74 69 63 61 |on of st|atistica|
|000006c0| 6c 6c 79 20 73 69 67 6e | 69 66 69 63 61 6e 74 20 |lly sign|ificant |
|000006d0| 73 65 71 75 65 6e 63 65 | 20 66 65 61 74 75 72 65 |sequence| feature|
|000006e0| 73 20 69 73 20 73 74 69 | 6c 6c 20 65 78 70 65 72 |s is sti|ll exper|
|000006f0| 69 6d 65 6e 74 61 6c 2e | 0d 0d 00 00 06 70 4d 61 |imental.|.....pMa|
|00000700| 63 50 61 74 74 65 72 6e | 20 77 61 73 20 6f 72 69 |cPattern| was ori|
|00000710| 67 69 6e 61 6c 6c 79 20 | 64 65 76 65 6c 6f 70 65 |ginally |develope|
|00000720| 64 20 74 6f 20 75 74 69 | 6c 69 73 65 20 74 68 65 |d to uti|lise the|
|00000730| 20 50 52 4f 53 49 54 45 | 20 70 61 74 74 65 72 6e | PROSITE| pattern|
|00000740| 20 64 61 74 61 62 61 73 | 65 20 66 6f 72 20 74 68 | databas|e for th|
|00000750| 65 20 41 70 70 6c 65 20 | 4d 61 63 69 6e 74 6f 73 |e Apple |Macintos|
|00000760| 68 2e 20 0d 0d 54 68 65 | 20 69 64 65 6e 74 69 66 |h. ..The| identif|
|00000770| 69 63 61 74 69 6f 6e 20 | 6f 66 20 63 6f 6e 73 65 |ication |of conse|
|00000780| 72 76 65 64 20 73 68 6f | 72 74 20 73 74 72 65 74 |rved sho|rt stret|
|00000790| 63 68 65 73 20 6f 66 20 | 72 65 73 69 64 75 65 73 |ches of |residues|
|000007a0| 20 28 73 6f 2d 63 61 6c | 6c 65 64 20 6d 6f 74 69 | (so-cal|led moti|
|000007b0| 66 73 20 6f 72 20 70 61 | 74 74 65 72 6e 73 29 20 |fs or pa|tterns) |
|000007c0| 63 61 6e 20 62 65 20 74 | 68 65 20 66 69 72 73 74 |can be t|he first|
|000007d0| 20 73 74 65 70 20 69 6e | 20 66 69 6e 64 69 6e 67 | step in| finding|
|000007e0| 20 61 20 62 69 6f 6c 6f | 67 69 63 61 6c 20 72 6f | a biolo|gical ro|
|000007f0| 6c 65 20 66 6f 72 20 61 | 20 6e 65 77 6c 79 20 64 |le for a| newly d|
|00000800| 65 74 65 72 6d 69 6e 65 | 64 20 70 72 6f 74 65 69 |etermine|d protei|
|00000810| 6e 20 73 65 71 75 65 6e | 63 65 2e 20 54 68 65 73 |n sequen|ce. Thes|
|00000820| 65 20 70 61 74 74 65 72 | 6e 73 20 66 72 65 71 75 |e patter|ns frequ|
|00000830| 65 6e 74 6c 79 20 63 6f | 72 72 65 73 70 6f 6e 64 |ently co|rrespond|
|00000840| 20 74 6f 20 66 75 6e 63 | 74 69 6f 6e 61 6c 20 69 | to func|tional i|
|00000850| 6d 70 6f 72 74 61 6e 74 | 20 72 65 67 69 6f 6e 73 |mportant| regions|
|00000860| 20 6f 66 20 61 20 70 72 | 6f 74 65 69 6e 2c 20 66 | of a pr|otein, f|
|00000870| 6f 72 20 69 6e 73 74 61 | 6e 63 65 2c 20 63 61 74 |or insta|nce, cat|
|00000880| 61 6c 79 74 69 63 20 73 | 69 74 65 73 2c 20 44 4e |alytic s|ites, DN|
|00000890| 41 2d 62 69 6e 64 69 6e | 67 20 73 69 74 65 73 2c |A-bindin|g sites,|
|000008a0| 20 6f 72 20 74 61 72 67 | 65 74 20 70 65 70 74 69 | or targ|et pepti|
|000008b0| 64 65 73 2e 20 54 68 65 | 20 64 65 74 65 63 74 69 |des. The| detecti|
|000008c0| 6f 6e 20 6f 66 20 61 20 | 6b 6e 6f 77 6e 20 73 65 |on of a |known se|
|000008d0| 71 75 65 6e 63 65 20 70 | 61 74 74 65 72 6e 20 63 |quence p|attern c|
|000008e0| 61 6e 20 74 68 65 72 65 | 66 6f 72 65 20 69 6d 6d |an there|fore imm|
|000008f0| 65 64 69 61 74 65 6c 79 | 20 73 75 67 67 65 73 74 |ediately| suggest|
|00000900| 20 61 20 70 72 6f 74 65 | 69 6e 20 66 75 6e 63 74 | a prote|in funct|
|00000910| 69 6f 6e 20 61 6e 64 20 | 64 69 72 65 63 74 20 66 |ion and |direct f|
|00000920| 75 72 74 68 65 72 20 65 | 78 70 65 72 69 6d 65 6e |urther e|xperimen|
|00000930| 74 61 6c 20 77 6f 72 6b | 2e 0d 0d 41 6e 20 65 78 |tal work|...An ex|
|00000940| 63 65 6c 6c 65 6e 74 20 | 64 61 74 61 62 61 73 65 |cellent |database|
|00000950| 20 6f 66 20 70 72 6f 74 | 65 69 6e 20 70 61 74 74 | of prot|ein patt|
|00000960| 65 72 6e 73 20 69 73 20 | 6d 61 69 6e 74 61 69 6e |erns is |maintain|
|00000970| 65 64 20 62 79 20 41 6d | 6f 73 20 42 61 69 72 6f |ed by Am|os Bairo|
|00000980| 63 68 2c 20 55 6e 69 76 | 65 72 73 69 74 79 20 6f |ch, Univ|ersity o|
|00000990| 66 20 47 65 6e 65 76 61 | 3a 20 50 52 4f 53 49 54 |f Geneva|: PROSIT|
|000009a0| 45 20 28 42 61 69 72 6f | 63 68 2c 20 31 39 39 32 |E (Bairo|ch, 1992|
|000009b0| 29 2e 20 54 68 69 73 20 | 64 61 74 61 62 61 73 65 |). This |database|
|000009c0| 20 69 73 20 61 76 61 69 | 6c 61 62 6c 65 20 69 6e | is avai|lable in|
|000009d0| 20 63 6f 6d 70 75 74 65 | 72 2d 72 65 61 64 61 62 | compute|r-readab|
|000009e0| 6c 65 20 66 6f 72 6d 20 | 66 72 6f 6d 20 45 4d 42 |le form |from EMB|
|000009f0| 4c 20 61 6e 64 20 73 65 | 76 65 72 61 6c 20 6f 74 |L and se|veral ot|
|00000a00| 68 65 72 20 73 6f 75 72 | 63 65 73 2e 20 49 74 20 |her sour|ces. It |
|00000a10| 64 6f 65 73 20 6e 6f 74 | 20 6f 6e 6c 79 20 63 6f |does not| only co|
|00000a20| 6e 74 61 69 6e 20 61 62 | 6f 75 74 20 38 30 30 20 |ntain ab|out 800 |
|00000a30| 64 69 66 66 65 72 65 6e | 74 20 65 6e 74 72 69 65 |differen|t entrie|
|00000a40| 73 20 62 75 74 20 61 6c | 73 6f 20 69 6e 63 6c 75 |s but al|so inclu|
|00000a50| 64 65 73 20 64 65 74 61 | 69 6c 65 64 20 74 65 78 |des deta|iled tex|
|00000a60| 74 75 61 6c 20 69 6e 66 | 6f 72 6d 61 74 69 6f 6e |tual inf|ormation|
|00000a70| 20 61 62 6f 75 74 20 61 | 6c 6c 20 74 68 65 73 65 | about a|ll these|
|00000a80| 20 70 61 74 74 65 72 6e | 73 2e 0d 0d 00 48 65 72 | pattern|s....Her|
|00000a90| 65 20 69 73 20 61 20 74 | 79 70 69 63 61 6c 20 65 |e is a t|ypical e|
|00000aa0| 78 61 6d 70 6c 65 20 6f | 66 20 61 20 50 52 4f 53 |xample o|f a PROS|
|00000ab0| 49 54 45 20 70 61 74 74 | 65 72 6e 2c 20 41 44 48 |ITE patt|ern, ADH|
|00000ac0| 5f 5a 49 4e 43 3a 0d 50 | 41 20 20 20 47 2d 48 2d |_ZINC:.P|A   G-H-|
|00000ad0| 45 2d 78 28 32 29 2d 47 | 2d 78 28 35 29 2d 47 2d |E-x(2)-G|-x(5)-G-|
|00000ae0| 78 28 32 29 2d 5b 56 43 | 5d 2e 0d 0d 53 70 65 6c |x(2)-[VC|]...Spel|
|00000af0| 6c 65 64 20 6f 75 74 20 | 74 68 69 73 20 6d 65 61 |led out |this mea|
|00000b00| 6e 73 3a 20 61 20 47 2c | 20 66 6f 6c 6c 6f 77 65 |ns: a G,| followe|
|00000b10| 64 20 62 79 20 61 6e 20 | 48 20 61 6e 64 20 61 6e |d by an |H and an|
|00000b20| 20 45 2c 20 74 68 65 6e | 20 61 6e 79 20 74 77 6f | E, then| any two|
|00000b30| 20 72 65 73 69 64 75 65 | 73 2c 20 61 20 47 2c 20 | residue|s, a G, |
|00000b40| 61 6e 79 20 66 69 76 65 | 20 72 65 73 69 64 75 65 |any five| residue|
|00000b50| 73 2c 20 61 20 47 20 61 | 67 61 69 6e 2c 20 61 6e |s, a G a|gain, an|
|00000b60| 64 20 61 66 74 65 72 20 | 74 77 6f 20 6d 6f 72 65 |d after |two more|
|00000b70| 20 72 65 73 69 64 75 65 | 73 20 65 69 74 68 65 72 | residue|s either|
|00000b80| 20 61 20 56 20 6f 72 20 | 61 20 43 2e 0d 0d 53 6f | a V or |a C...So|
|00000b90| 20 69 66 20 79 6f 75 72 | 20 73 65 71 75 65 6e 63 | if your| sequenc|
|00000ba0| 65 20 63 6f 6e 74 61 69 | 6e 73 2c 20 65 2e 67 2e |e contai|ns, e.g.|
|00000bb0| 2c 20 47 48 45 41 4c 47 | 41 47 43 54 43 47 54 53 |, GHEALG|AGCTCGTS|
|00000bc0| 43 2c 20 4d 61 63 50 61 | 74 74 65 72 6e 20 77 69 |C, MacPa|ttern wi|
|00000bd0| 6c 6c 20 72 65 70 6f 72 | 74 20 61 20 70 61 74 74 |ll repor|t a patt|
|00000be0| 65 72 6e 20 6d 61 74 63 | 68 2c 20 61 6e 64 20 69 |ern matc|h, and i|
|00000bf0| 74 20 69 73 20 71 75 69 | 74 65 20 6c 69 6b 65 6c |t is qui|te likel|
|00000c00| 79 20 74 68 61 74 20 79 | 6f 75 72 20 70 72 6f 74 |y that y|our prot|
|00000c10| 65 69 6e 20 69 73 20 61 | 20 5a 69 6e 63 2d 63 6f |ein is a| Zinc-co|
|00000c20| 6e 74 61 69 6e 69 6e 67 | 20 61 6c 63 6f 68 6f 6c |ntaining| alcohol|
|00000c30| 20 64 65 68 79 64 72 6f | 67 65 6e 61 73 65 2e 20 | dehydro|genase. |
|00000c40| 49 66 20 79 6f 75 20 75 | 73 65 20 4d 61 63 50 61 |If you u|se MacPa|
|00000c50| 74 74 65 72 6e 20 74 6f | 20 65 78 61 6d 69 6e 65 |ttern to| examine|
|00000c60| 20 74 68 65 20 41 44 48 | 5f 5a 49 4e 43 20 65 6e | the ADH|_ZINC en|
|00000c70| 74 72 79 20 61 6e 64 20 | 69 74 73 20 64 6f 63 75 |try and |its docu|
|00000c80| 6d 65 6e 74 61 74 69 6f | 6e 2c 20 79 6f 75 20 77 |mentatio|n, you w|
|00000c90| 69 6c 6c 20 66 69 6e 64 | 20 74 68 61 74 20 74 68 |ill find| that th|
|00000ca0| 69 73 20 70 61 74 74 65 | 72 6e 20 69 64 65 6e 74 |is patte|rn ident|
|00000cb0| 69 66 69 65 73 20 61 6c | 6c 20 6b 6e 6f 77 6e 20 |ifies al|l known |
|00000cc0| 5a 69 6e 63 2d 63 6f 6e | 74 61 69 6e 69 6e 67 20 |Zinc-con|taining |
|00000cd0| 61 6c 63 6f 68 6f 6c 20 | 64 65 68 79 64 72 6f 67 |alcohol |dehydrog|
|00000ce0| 65 6e 61 73 65 73 20 69 | 6e 20 53 57 49 53 53 2d |enases i|n SWISS-|
|00000cf0| 50 52 4f 54 20 61 6e 64 | 20 6e 6f 20 75 6e 72 65 |PROT and| no unre|
|00000d00| 6c 61 74 65 64 20 70 72 | 6f 74 65 69 6e 73 2c 20 |lated pr|oteins, |
|00000d10| 77 68 69 63 68 20 6d 61 | 6b 65 73 20 69 74 20 65 |which ma|kes it e|
|00000d20| 76 65 6e 20 6d 6f 72 65 | 20 6c 69 6b 65 6c 79 20 |ven more| likely |
|00000d30| 74 68 61 74 20 79 6f 75 | 72 20 73 65 71 75 65 6e |that you|r sequen|
|00000d40| 63 65 20 69 73 20 69 6e | 64 65 65 64 20 61 20 6d |ce is in|deed a m|
|00000d50| 65 6d 62 65 72 20 6f 66 | 20 74 68 69 73 20 70 72 |ember of| this pr|
|00000d60| 6f 74 65 69 6e 20 66 61 | 6d 69 6c 79 2e 0d 00 00 |otein fa|mily....|
|00000d70| 00 f3 49 66 20 79 6f 75 | 20 70 75 62 6c 69 73 68 |..If you| publish|
|00000d80| 20 72 65 73 75 6c 74 73 | 20 6f 62 74 61 69 6e 65 | results| obtaine|
|00000d90| 64 20 77 69 74 68 20 74 | 68 65 20 68 65 6c 70 20 |d with t|he help |
|00000da0| 6f 66 20 74 68 69 73 20 | 70 72 6f 67 72 61 6d 2c |of this |program,|
|00000db0| 20 70 6c 65 61 73 65 20 | 63 69 74 65 20 74 68 65 | please |cite the|
|00000dc0| 20 66 6f 6c 6c 6f 77 69 | 6e 67 20 70 75 62 6c 69 | followi|ng publi|
|00000dd0| 63 61 74 69 6f 6e 3a 0d | 0d 20 20 20 20 20 20 20 |cation:.|.       |
|00000de0| 20 46 75 63 68 73 2c 20 | 52 2e 20 28 31 39 39 31 | Fuchs, |R. (1991|
|00000df0| 29 20 4d 61 63 50 61 74 | 74 65 72 6e 3a 20 50 72 |) MacPat|tern: Pr|
|00000e00| 6f 74 65 69 6e 20 70 61 | 74 74 65 72 6e 0d 20 20 |otein pa|ttern.  |
|00000e10| 20 20 20 20 20 20 73 65 | 61 72 63 68 69 6e 67 20 |      se|arching |
|00000e20| 6f 6e 20 74 68 65 20 41 | 70 70 6c 65 20 4d 61 63 |on the A|pple Mac|
|00000e30| 69 6e 74 6f 73 68 2e 0d | 20 20 20 20 20 20 20 20 |intosh..|        |
|00000e40| 43 6f 6d 70 75 74 2e 20 | 41 70 70 6c 69 63 2e 20 |Comput. |Applic. |
|00000e50| 42 69 6f 73 63 69 2e 20 | 37 2c 20 31 30 35 2d 31 |Biosci. |7, 105-1|
|00000e60| 30 36 2e 0d 0d 00 00 02 | 6d 41 6c 74 68 6f 75 67 |06......|mAlthoug|
|00000e70| 68 20 74 68 65 20 61 75 | 74 68 6f 72 20 69 73 20 |h the au|thor is |
|00000e80| 61 66 66 69 6c 69 61 74 | 65 64 20 77 69 74 68 20 |affiliat|ed with |
|00000e90| 74 68 65 20 45 4d 42 4c | 20 44 61 74 61 20 4c 69 |the EMBL| Data Li|
|00000ea0| 62 72 61 72 79 2c 20 4d | 61 63 50 61 74 74 65 72 |brary, M|acPatter|
|00000eb0| 6e 20 73 74 61 72 74 65 | 64 20 6f 66 66 20 61 73 |n starte|d off as|
|00000ec0| 20 61 20 70 72 69 76 61 | 74 65 20 72 65 73 65 61 | a priva|te resea|
|00000ed0| 72 63 68 20 70 72 6f 6a | 65 63 74 20 61 6e 64 20 |rch proj|ect and |
|00000ee0| 69 73 20 6e 6f 20 6f 66 | 66 69 63 69 61 6c 20 45 |is no of|ficial E|
|00000ef0| 4d 42 4c 20 44 61 74 61 | 20 4c 69 62 72 61 72 79 |MBL Data| Library|
|00000f00| 20 70 72 6f 64 75 63 74 | 2e 20 54 68 65 72 65 66 | product|. Theref|
|00000f10| 6f 72 65 2c 20 74 68 65 | 20 44 61 74 61 20 4c 69 |ore, the| Data Li|
|00000f20| 62 72 61 72 79 20 69 73 | 20 69 6e 20 6e 6f 20 77 |brary is| in no w|
|00000f30| 61 79 20 72 65 73 70 6f | 6e 73 69 62 6c 65 20 66 |ay respo|nsible f|
|00000f40| 6f 72 20 61 6e 79 20 70 | 72 6f 62 6c 65 6d 73 20 |or any p|roblems |
|00000f50| 74 68 61 74 20 6d 69 67 | 68 74 20 6f 63 63 75 72 |that mig|ht occur|
|00000f60| 20 77 68 65 6e 20 75 73 | 69 6e 67 20 74 68 69 73 | when us|ing this|
|00000f70| 20 70 72 6f 67 72 61 6d | 20 61 6e 64 20 63 61 6e | program| and can|
|00000f80| 6e 6f 74 20 70 72 6f 76 | 69 64 65 20 61 6e 79 20 |not prov|ide any |
|00000f90| 73 75 70 70 6f 72 74 2e | 0d 0d 48 6f 77 65 76 65 |support.|..Howeve|
|00000fa0| 72 2c 20 49 20 61 6d 20 | 77 69 6c 6c 69 6e 67 20 |r, I am |willing |
|00000fb0| 74 6f 20 6d 61 69 6e 74 | 61 69 6e 20 61 6e 64 20 |to maint|ain and |
|00000fc0| 69 6d 70 72 6f 76 65 20 | 74 68 69 73 20 70 72 6f |improve |this pro|
|00000fd0| 67 72 61 6d 2c 20 73 6f | 20 66 65 65 6c 20 66 72 |gram, so| feel fr|
|00000fe0| 65 65 20 74 6f 20 63 6f | 6e 74 61 63 74 20 6d 65 |ee to co|ntact me|
|00000ff0| 20 64 69 72 65 63 74 6c | 79 20 77 69 74 68 20 63 | directl|y with c|
|00001000| 6f 6d 6d 65 6e 74 73 2c | 20 62 75 67 20 72 65 70 |omments,| bug rep|
|00001010| 6f 72 74 73 2c 20 71 75 | 65 73 74 69 6f 6e 73 2c |orts, qu|estions,|
|00001020| 20 65 74 63 2e 2e 2e 20 | 50 6c 65 61 73 65 2c 20 | etc... |Please, |
|00001030| 75 73 65 20 65 6c 65 63 | 74 72 6f 6e 69 63 20 6d |use elec|tronic m|
|00001040| 61 69 6c 20 69 66 20 70 | 6f 73 73 69 62 6c 65 2e |ail if p|ossible.|
|00001050| 0d 0d 45 2d 6d 61 69 6c | 20 61 64 64 72 65 73 73 |..E-mail| address|
|00001060| 3a 20 46 75 63 68 73 40 | 45 4d 42 4c 2d 48 65 69 |: Fuchs@|EMBL-Hei|
|00001070| 64 65 6c 62 65 72 67 2e | 44 45 2e 0d 0d 50 6f 73 |delberg.|DE...Pos|
|00001080| 74 61 6c 20 61 64 64 72 | 65 73 73 3a 0d 0d 52 61 |tal addr|ess:..Ra|
|00001090| 69 6e 65 72 20 46 75 63 | 68 73 0d 45 4d 42 4c 20 |iner Fuc|hs.EMBL |
|000010a0| 44 61 74 61 20 4c 69 62 | 72 61 72 79 0d 50 6f 73 |Data Lib|rary.Pos|
|000010b0| 74 66 61 63 68 20 31 30 | 2e 32 32 30 39 0d 36 39 |tfach 10|.2209.69|
|000010c0| 30 31 32 20 48 65 69 64 | 65 6c 62 65 72 67 0d 47 |012 Heid|elberg.G|
|000010d0| 65 72 6d 61 6e 79 00 00 | 02 61 41 6c 6c 20 72 69 |ermany..|.aAll ri|
|000010e0| 67 68 74 73 20 61 72 65 | 20 72 65 73 65 72 76 65 |ghts are| reserve|
|000010f0| 64 20 28 63 6f 70 79 72 | 69 67 68 74 20 a9 20 31 |d (copyr|ight . 1|
|00001100| 39 39 30 2d 31 39 39 33 | 29 20 62 79 20 52 61 69 |990-1993|) by Rai|
|00001110| 6e 65 72 20 46 75 63 68 | 73 2e 0d 0d 54 68 69 73 |ner Fuch|s...This|
|00001120| 20 70 72 6f 67 72 61 6d | 20 6d 61 79 20 62 65 20 | program| may be |
|00001130| 66 72 65 65 6c 79 20 63 | 6f 70 69 65 64 20 61 6e |freely c|opied an|
|00001140| 64 20 72 65 64 69 73 74 | 72 69 62 75 74 65 64 20 |d redist|ributed |
|00001150| 77 69 74 68 6f 75 74 20 | 70 72 69 6f 72 20 70 65 |without |prior pe|
|00001160| 72 6d 69 73 73 69 6f 6e | 2c 20 70 72 6f 76 69 64 |rmission|, provid|
|00001170| 65 64 20 74 68 61 74 20 | 74 68 65 20 73 6f 66 74 |ed that |the soft|
|00001180| 77 61 72 65 20 61 6e 64 | 20 74 68 65 20 64 6f 63 |ware and| the doc|
|00001190| 75 6d 65 6e 74 61 74 69 | 6f 6e 20 61 72 65 20 61 |umentati|on are a|
|000011a0| 6c 77 61 79 73 20 62 75 | 6e 64 6c 65 64 20 74 6f |lways bu|ndled to|
|000011b0| 67 65 74 68 65 72 2c 20 | 69 6e 20 77 68 6f 6c 65 |gether, |in whole|
|000011c0| 20 61 6e 64 20 75 6e 63 | 68 61 6e 67 65 64 2e 20 | and unc|hanged. |
|000011d0| 41 70 70 65 6e 64 69 78 | 20 41 20 6f 66 20 74 68 |Appendix| A of th|
|000011e0| 69 73 20 6d 61 6e 75 61 | 6c 20 6c 69 73 74 73 20 |is manua|l lists |
|000011f0| 61 6c 6c 20 66 69 6c 65 | 73 20 74 68 61 74 20 63 |all file|s that c|
|00001200| 6f 6d 70 72 69 73 65 20 | 74 68 65 20 4d 61 63 50 |omprise |the MacP|
|00001210| 61 74 74 65 72 6e 20 64 | 69 73 74 72 69 62 75 74 |attern d|istribut|
|00001220| 69 6f 6e 20 70 61 63 6b | 61 67 65 2e 0d 0d 4d 61 |ion pack|age...Ma|
|00001230| 63 50 61 74 74 65 72 6e | 20 6d 61 79 20 6e 6f 74 |cPattern| may not|
|00001240| 20 62 65 20 73 6f 6c 64 | 20 6f 72 20 6f 66 66 65 | be sold| or offe|
|00001250| 72 65 64 20 66 6f 72 20 | 73 61 6c 65 2c 20 6f 72 |red for |sale, or|
|00001260| 20 62 75 6e 64 6c 65 64 | 20 77 69 74 68 20 61 6e | bundled| with an|
|00001270| 6f 74 68 65 72 20 70 72 | 6f 64 75 63 74 20 6f 66 |other pr|oduct of|
|00001280| 66 65 72 65 64 20 66 6f | 72 20 73 61 6c 65 2c 20 |fered fo|r sale, |
|00001290| 65 78 63 65 70 74 20 77 | 69 74 68 20 74 68 65 20 |except w|ith the |
|000012a0| 65 78 70 72 65 73 73 20 | 70 65 72 6d 69 73 73 69 |express |permissi|
|000012b0| 6f 6e 20 6f 66 20 74 68 | 65 20 61 75 74 68 6f 72 |on of th|e author|
|000012c0| 2e 20 54 68 65 73 65 20 | 72 65 73 74 72 69 63 74 |. These |restrict|
|000012d0| 69 6f 6e 73 20 64 6f 20 | 6e 6f 74 20 70 72 65 76 |ions do |not prev|
|000012e0| 65 6e 74 20 74 68 65 20 | 75 73 65 20 6f 66 20 4d |ent the |use of M|
|000012f0| 61 63 50 61 74 74 65 72 | 6e 20 62 79 20 63 6f 6d |acPatter|n by com|
|00001300| 6d 65 72 63 69 61 6c 20 | 75 73 65 72 73 2c 20 65 |mercial |users, e|
|00001310| 76 65 6e 20 69 66 20 74 | 68 65 20 72 65 73 75 6c |ven if t|he resul|
|00001320| 74 73 20 61 72 65 20 6f | 66 20 63 6f 6d 6d 65 72 |ts are o|f commer|
|00001330| 63 69 61 6c 20 76 61 6c | 75 65 2e 00 00 11 8b a5 |cial val|ue......|
|00001340| 20 4e 65 77 20 49 6e 64 | 65 78 c9 0d 0d 43 68 6f | New Ind|ex...Cho|
|00001350| 6f 73 65 20 74 68 69 73 | 20 63 6f 6d 6d 61 6e 64 |ose this| command|
|00001360| 20 74 6f 20 70 72 6f 64 | 75 63 65 20 61 20 6e 65 | to prod|uce a ne|
|00001370| 77 20 64 61 74 61 62 61 | 73 65 20 69 6e 64 65 78 |w databa|se index|
|00001380| 20 66 69 6c 65 2e 20 46 | 72 6f 6d 20 74 68 65 20 | file. F|rom the |
|00001390| 73 75 62 6d 65 6e 75 20 | 73 65 6c 65 63 74 20 74 |submenu |select t|
|000013a0| 68 65 20 74 79 70 65 20 | 6f 66 20 64 61 74 61 62 |he type |of datab|
|000013b0| 61 73 65 20 79 6f 75 20 | 77 61 6e 74 20 74 6f 20 |ase you |want to |
|000013c0| 69 6e 64 65 78 2e 20 46 | 6f 72 20 64 65 74 61 69 |index. F|or detai|
|000013d0| 6c 65 64 20 69 6e 66 6f | 72 6d 61 74 69 6f 6e 2c |led info|rmation,|
|000013e0| 20 70 6c 65 61 73 65 20 | 73 65 65 20 68 65 6c 70 | please |see help|
|000013f0| 20 74 6f 70 69 63 73 20 | d4 50 61 74 74 65 72 6e | topics |.Pattern|
|00001400| 20 44 61 74 61 62 61 73 | 65 73 d5 20 61 6e 64 20 | Databas|es. and |
|00001410| d4 42 6c 6f 63 6b 20 44 | 61 74 61 62 61 73 65 73 |.Block D|atabases|
|00001420| d5 2e 0d 0d a5 20 4f 70 | 65 6e 20 44 61 74 61 62 |..... Op|en Datab|
|00001430| 61 73 65 20 46 69 6c 65 | c9 20 28 6f 72 20 11 2d |ase File|. (or .-|
|00001440| 4f 29 0d 0d 54 68 69 73 | 20 63 6f 6d 6d 61 6e 64 |O)..This| command|
|00001450| 20 64 69 73 70 6c 61 79 | 73 20 61 20 64 69 72 65 | display|s a dire|
|00001460| 63 74 6f 72 79 20 64 69 | 61 6c 6f 67 20 62 6f 78 |ctory di|alog box|
|00001470| 20 77 68 69 63 68 20 6c | 65 74 73 20 79 6f 75 20 | which l|ets you |
|00001480| 73 65 6c 65 63 74 20 61 | 6e 20 65 78 69 73 74 69 |select a|n existi|
|00001490| 6e 67 20 64 61 74 61 62 | 61 73 65 20 69 6e 64 65 |ng datab|ase inde|
|000014a0| 78 20 66 69 6c 65 20 6f | 6e 20 74 68 65 20 64 69 |x file o|n the di|
|000014b0| 73 6b 2e 20 54 68 69 73 | 20 63 6f 6d 6d 61 6e 64 |sk. This| command|
|000014c0| 20 69 73 20 6e 6f 74 20 | 61 76 61 69 6c 61 62 6c | is not |availabl|
|000014d0| 65 20 69 66 20 74 68 65 | 20 6d 61 78 69 6d 75 6d |e if the| maximum|
|000014e0| 20 6e 75 6d 62 65 72 20 | 6f 66 20 77 69 6e 64 6f | number |of windo|
|000014f0| 77 73 20 69 73 20 61 6c | 72 65 61 64 79 20 6f 70 |ws is al|ready op|
|00001500| 65 6e 2e 0d 0d 54 65 63 | 68 6e 69 63 61 6c 20 69 |en...Tec|hnical i|
|00001510| 6e 66 6f 72 6d 61 74 69 | 6f 6e 3a 20 4f 6e 6c 79 |nformati|on: Only|
|00001520| 20 66 69 6c 65 73 20 6f | 66 20 74 79 70 65 20 27 | files o|f type '|
|00001530| 4d 43 50 58 27 20 61 6e | 64 20 27 4d 43 50 42 27 |MCPX' an|d 'MCPB'|
|00001540| 20 61 72 65 20 73 68 6f | 77 6e 20 69 6e 20 74 68 | are sho|wn in th|
|00001550| 65 20 64 69 72 65 63 74 | 6f 72 79 20 64 69 61 6c |e direct|ory dial|
|00001560| 6f 67 20 62 6f 78 20 73 | 6f 20 79 6f 75 20 63 61 |og box s|o you ca|
|00001570| 6e 6e 6f 74 20 6f 70 65 | 6e 20 6e 6f 72 6d 61 6c |nnot ope|n normal|
|00001580| 20 74 65 78 74 20 66 69 | 6c 65 73 20 73 75 63 68 | text fi|les such|
|00001590| 20 61 73 20 74 68 65 20 | 6f 72 69 67 69 6e 61 6c | as the |original|
|000015a0| 20 64 61 74 61 62 61 73 | 65 20 74 65 78 74 20 66 | databas|e text f|
|000015b0| 69 6c 65 73 20 69 6e 61 | 64 76 65 72 74 65 6e 74 |iles ina|dvertent|
|000015c0| 6c 79 2e 0d 0d 4d 61 6b | 65 20 73 75 72 65 20 74 |ly...Mak|e sure t|
|000015d0| 68 61 74 20 69 6e 64 65 | 78 20 61 6e 64 20 64 61 |hat inde|x and da|
|000015e0| 74 61 62 61 73 65 20 66 | 69 6c 65 73 20 61 72 65 |tabase f|iles are|
|000015f0| 20 69 6e 20 74 68 65 20 | 73 61 6d 65 20 66 6f 6c | in the |same fol|
|00001600| 64 65 72 20 69 66 20 79 | 6f 75 20 77 61 6e 74 20 |der if y|ou want |
|00001610| 74 6f 20 68 61 76 65 20 | 61 63 63 65 73 73 20 74 |to have |access t|
|00001620| 6f 20 65 6e 74 72 79 20 | 64 6f 63 75 6d 65 6e 74 |o entry |document|
|00001630| 61 74 69 6f 6e 2e 20 53 | 65 65 20 68 65 6c 70 20 |ation. S|ee help |
|00001640| 74 6f 70 69 63 73 20 d4 | 50 61 74 74 65 72 6e 20 |topics .|Pattern |
|00001650| 44 61 74 61 62 61 73 65 | 73 d5 20 61 6e 64 20 d4 |Database|s. and .|
|00001660| 42 6c 6f 63 6b 20 44 61 | 74 61 62 61 73 65 73 d5 |Block Da|tabases.|
|00001670| 20 66 6f 72 20 64 65 74 | 61 69 6c 73 2e 20 0d 0d | for det|ails. ..|
|00001680| 59 6f 75 20 6d 61 79 20 | 68 61 76 65 20 6d 6f 72 |You may |have mor|
|00001690| 65 20 74 68 61 6e 20 6f | 6e 65 20 64 61 74 61 62 |e than o|ne datab|
|000016a0| 61 73 65 20 66 69 6c 65 | 20 6f 70 65 6e 20 61 74 |ase file| open at|
|000016b0| 20 74 68 65 20 73 61 6d | 65 20 74 69 6d 65 20 28 | the sam|e time (|
|000016c0| 65 2e 67 2e 20 50 52 4f | 53 49 54 45 20 61 6e 64 |e.g. PRO|SITE and|
|000016d0| 20 42 4c 4f 43 4b 53 20 | 6f 72 20 79 6f 75 72 20 | BLOCKS |or your |
|000016e0| 6f 77 6e 20 70 72 69 76 | 61 74 65 20 64 61 74 61 |own priv|ate data|
|000016f0| 62 61 73 65 73 29 2c 20 | 62 75 74 20 6e 6f 74 20 |bases), |but not |
|00001700| 74 68 65 20 73 61 6d 65 | 20 66 69 6c 65 20 74 77 |the same| file tw|
|00001710| 69 63 65 2e 20 0d 0d 41 | 66 74 65 72 20 72 65 61 |ice. ..A|fter rea|
|00001720| 64 69 6e 67 20 74 68 65 | 20 69 6e 64 65 78 20 66 |ding the| index f|
|00001730| 69 6c 65 2c 20 74 68 65 | 20 64 61 74 61 62 61 73 |ile, the| databas|
|00001740| 65 20 65 6e 74 72 69 65 | 73 20 61 72 65 20 64 69 |e entrie|s are di|
|00001750| 73 70 6c 61 79 65 64 20 | 69 6e 20 61 20 64 61 74 |splayed |in a dat|
|00001760| 61 62 61 73 65 20 62 72 | 6f 77 73 65 72 20 77 69 |abase br|owser wi|
|00001770| 6e 64 6f 77 20 28 73 65 | 65 20 68 65 6c 70 20 74 |ndow (se|e help t|
|00001780| 6f 70 69 63 20 d4 57 69 | 6e 64 6f 77 73 d5 29 2e |opic .Wi|ndows.).|
|00001790| 0d 0d 00 a5 20 4c 6f 61 | 64 20 53 65 71 75 65 6e |.... Loa|d Sequen|
|000017a0| 63 65 20 46 69 6c 65 c9 | 20 28 6f 72 20 11 2d 4c |ce File.| (or .-L|
|000017b0| 29 0d 0d 54 68 69 73 20 | 6d 65 6e 75 20 63 6f 6d |)..This |menu com|
|000017c0| 6d 61 6e 64 20 61 6c 6c | 6f 77 73 20 79 6f 75 20 |mand all|ows you |
|000017d0| 74 6f 20 6f 70 65 6e 20 | 61 20 66 69 6c 65 20 74 |to open |a file t|
|000017e0| 68 61 74 20 63 6f 6e 74 | 61 69 6e 73 20 73 65 71 |hat cont|ains seq|
|000017f0| 75 65 6e 63 65 20 64 61 | 74 61 2e 20 4d 61 63 50 |uence da|ta. MacP|
|00001800| 61 74 74 65 72 6e 20 63 | 61 6e 20 70 72 6f 63 65 |attern c|an proce|
|00001810| 73 73 20 61 20 76 61 72 | 69 65 74 79 20 6f 66 20 |ss a var|iety of |
|00001820| 64 69 66 66 65 72 65 6e | 74 20 66 6f 72 6d 61 74 |differen|t format|
|00001830| 73 3b 20 73 65 65 20 68 | 65 6c 70 20 74 6f 70 69 |s; see h|elp topi|
|00001840| 63 20 d4 53 65 71 75 65 | 6e 63 65 20 46 69 6c 65 |c .Seque|nce File|
|00001850| 20 46 6f 72 6d 61 74 73 | d5 20 66 6f 72 20 6d 6f | Formats|. for mo|
|00001860| 72 65 20 69 6e 66 6f 72 | 6d 61 74 69 6f 6e 2e 0d |re infor|mation..|
|00001870| 20 20 20 0d 4f 6e 6c 79 | 20 6f 6e 65 20 73 65 71 |   .Only| one seq|
|00001880| 75 65 6e 63 65 20 66 69 | 6c 65 20 63 61 6e 20 62 |uence fi|le can b|
|00001890| 65 20 6f 70 65 6e 20 61 | 74 20 61 20 74 69 6d 65 |e open a|t a time|
|000018a0| 2e 20 54 68 65 20 73 65 | 71 75 65 6e 63 65 20 66 |. The se|quence f|
|000018b0| 69 6c 65 2c 20 68 6f 77 | 65 76 65 72 2c 20 6d 61 |ile, how|ever, ma|
|000018c0| 79 20 63 6f 6e 74 61 69 | 6e 20 6d 6f 72 65 20 74 |y contai|n more t|
|000018d0| 68 61 6e 20 6f 6e 65 20 | 73 65 71 75 65 6e 63 65 |han one |sequence|
|000018e0| 2e 20 4d 61 63 50 61 74 | 74 65 72 6e 20 64 6f 65 |. MacPat|tern doe|
|000018f0| 73 20 6e 6f 74 20 61 6c | 6c 6f 77 20 79 6f 75 20 |s not al|low you |
|00001900| 74 6f 20 73 65 6c 65 63 | 74 20 69 6e 64 69 76 69 |to selec|t indivi|
|00001910| 64 75 61 6c 20 73 65 71 | 75 65 6e 63 65 73 20 66 |dual seq|uences f|
|00001920| 72 6f 6d 20 6d 75 6c 74 | 69 2d 73 65 71 75 65 6e |rom mult|i-sequen|
|00001930| 63 65 20 64 61 74 61 20 | 66 69 6c 65 73 2e 20 49 |ce data |files. I|
|00001940| 6e 73 74 65 61 64 2c 20 | 4d 61 63 50 61 74 74 65 |nstead, |MacPatte|
|00001950| 72 6e 20 75 73 65 73 20 | 61 6c 6c 20 73 65 71 75 |rn uses |all sequ|
|00001960| 65 6e 63 65 73 20 66 72 | 6f 6d 20 61 20 73 65 71 |ences fr|om a seq|
|00001970| 75 65 6e 63 65 20 66 69 | 6c 65 20 66 6f 72 20 74 |uence fi|le for t|
|00001980| 68 65 20 61 6e 61 6c 79 | 73 69 73 2e 0d 20 0d 41 |he analy|sis.. .A|
|00001990| 66 74 65 72 20 79 6f 75 | 20 68 61 76 65 20 63 68 |fter you| have ch|
|000019a0| 6f 73 65 6e 20 61 20 66 | 69 6c 65 20 66 72 6f 6d |osen a f|ile from|
|000019b0| 20 74 68 65 20 73 74 61 | 6e 64 61 72 64 20 64 69 | the sta|ndard di|
|000019c0| 72 65 63 74 6f 72 79 20 | 64 69 61 6c 6f 67 20 62 |rectory |dialog b|
|000019d0| 6f 78 20 4d 61 63 50 61 | 74 74 65 72 6e 20 74 72 |ox MacPa|ttern tr|
|000019e0| 69 65 73 20 74 6f 20 64 | 65 74 65 72 6d 69 6e 65 |ies to d|etermine|
|000019f0| 20 74 68 65 20 66 6f 72 | 6d 61 74 20 6f 66 20 74 | the for|mat of t|
|00001a00| 68 65 20 73 65 71 75 65 | 6e 63 65 73 20 62 79 20 |he seque|nces by |
|00001a10| 63 68 65 63 6b 69 6e 67 | 20 74 68 65 20 62 65 67 |checking| the beg|
|00001a20| 69 6e 6e 69 6e 67 20 6f | 66 20 74 68 65 20 66 69 |inning o|f the fi|
|00001a30| 72 73 74 20 65 6e 74 72 | 79 2e 20 49 74 20 74 68 |rst entr|y. It th|
|00001a40| 65 6e 20 6f 70 65 6e 73 | 20 61 20 73 65 71 75 65 |en opens| a seque|
|00001a50| 6e 63 65 20 77 69 6e 64 | 6f 77 20 77 68 69 63 68 |nce wind|ow which|
|00001a60| 20 64 69 73 70 6c 61 79 | 73 20 74 68 65 20 73 65 | display|s the se|
|00001a70| 71 75 65 6e 63 65 20 66 | 6f 72 6d 61 74 2e 20 41 |quence f|ormat. A|
|00001a80| 6c 6c 20 73 65 71 75 65 | 6e 63 65 73 20 69 6e 20 |ll seque|nces in |
|00001a90| 61 20 66 69 6c 65 20 6d | 75 73 74 20 68 61 76 65 |a file m|ust have|
|00001aa0| 20 74 68 65 20 73 61 6d | 65 20 66 6f 72 6d 61 74 | the sam|e format|
|00001ab0| 2e 0d 0d a5 20 43 6c 6f | 73 65 20 28 6f 72 20 11 |.... Clo|se (or .|
|00001ac0| 2d 57 29 0d 0d 54 68 69 | 73 20 63 6f 6d 6d 61 6e |-W)..Thi|s comman|
|00001ad0| 64 20 63 6c 6f 73 65 73 | 20 74 68 65 20 61 63 74 |d closes| the act|
|00001ae0| 69 76 65 20 77 69 6e 64 | 6f 77 20 61 6e 64 20 69 |ive wind|ow and i|
|00001af0| 73 20 74 68 65 20 73 61 | 6d 65 20 61 73 20 63 6c |s the sa|me as cl|
|00001b00| 69 63 6b 69 6e 67 20 69 | 6e 20 74 68 65 20 61 63 |icking i|n the ac|
|00001b10| 74 69 76 65 20 77 69 6e | 64 6f 77 d5 73 20 63 6c |tive win|dow.s cl|
|00001b20| 6f 73 65 20 62 6f 78 2e | 20 49 66 20 74 68 65 20 |ose box.| If the |
|00001b30| 63 6f 6e 74 65 6e 74 20 | 6f 66 20 74 68 69 73 20 |content |of this |
|00001b40| 77 69 6e 64 6f 77 20 68 | 61 73 20 62 65 65 6e 20 |window h|as been |
|00001b50| 6d 6f 64 69 66 69 65 64 | 20 73 69 6e 63 65 20 69 |modified| since i|
|00001b60| 74 20 77 61 73 20 6c 61 | 73 74 20 73 61 76 65 64 |t was la|st saved|
|00001b70| 2c 20 61 20 64 69 61 6c | 6f 67 20 62 6f 78 20 77 |, a dial|og box w|
|00001b80| 69 6c 6c 20 61 73 6b 20 | 79 6f 75 20 69 66 20 79 |ill ask |you if y|
|00001b90| 6f 75 20 77 61 6e 74 20 | 74 6f 20 73 61 76 65 20 |ou want |to save |
|00001ba0| 74 68 65 20 63 68 61 6e | 67 65 73 2c 20 64 69 73 |the chan|ges, dis|
|00001bb0| 63 61 72 64 20 74 68 65 | 6d 2c 20 6f 72 20 63 61 |card the|m, or ca|
|00001bc0| 6e 63 65 6c 20 74 68 65 | 20 43 6c 6f 73 65 20 63 |ncel the| Close c|
|00001bd0| 6f 6d 6d 61 6e 64 2e 20 | 49 66 20 74 68 65 20 63 |ommand. |If the c|
|00001be0| 68 65 63 6b 62 6f 78 20 | 6c 61 62 65 6c 6c 65 64 |heckbox |labelled|
|00001bf0| 20 d2 43 6f 6e 66 69 72 | 6d 20 63 68 61 6e 67 65 | .Confir|m change|
|00001c00| 73 d3 20 69 6e 20 74 68 | 65 20 d2 47 65 6e 65 72 |s. in th|e .Gener|
|00001c10| 61 6c 20 4f 70 74 69 6f | 6e 73 d3 20 64 69 61 6c |al Optio|ns. dial|
|00001c20| 6f 67 20 62 6f 78 20 69 | 73 20 6e 6f 74 20 63 68 |og box i|s not ch|
|00001c30| 65 63 6b 65 64 20 6f 72 | 20 69 66 20 79 6f 75 20 |ecked or| if you |
|00001c40| 68 6f 6c 64 20 64 6f 77 | 6e 20 74 68 65 20 53 68 |hold dow|n the Sh|
|00001c50| 69 66 74 20 6b 65 79 20 | 77 68 65 6e 20 79 6f 75 |ift key |when you|
|00001c60| 20 63 6c 6f 73 65 20 61 | 20 77 69 6e 64 6f 77 2c | close a| window,|
|00001c70| 20 63 68 61 6e 67 65 73 | 20 61 72 65 20 64 69 73 | changes| are dis|
|00001c80| 63 61 72 64 65 64 20 73 | 69 6c 65 6e 74 6c 79 2e |carded s|ilently.|
|00001c90| 0d 0d 4e 6f 74 65 3a 20 | 54 6f 20 71 75 69 63 6b |..Note: |To quick|
|00001ca0| 6c 79 20 63 6c 6f 73 65 | 20 61 6c 6c 20 77 69 6e |ly close| all win|
|00001cb0| 64 6f 77 73 20 73 69 6d | 75 6c 74 61 6e 65 6f 75 |dows sim|ultaneou|
|00001cc0| 73 6c 79 20 68 6f 6c 64 | 20 64 6f 77 6e 20 74 68 |sly hold| down th|
|00001cd0| 65 20 4f 70 74 69 6f 6e | 73 20 6b 65 79 20 77 68 |e Option|s key wh|
|00001ce0| 69 6c 65 20 63 68 6f 6f | 73 69 6e 67 20 43 6c 6f |ile choo|sing Clo|
|00001cf0| 73 65 20 6f 72 20 63 6c | 69 63 6b 69 6e 67 20 69 |se or cl|icking i|
|00001d00| 6e 74 6f 20 61 20 77 69 | 6e 64 6f 77 d5 73 20 63 |nto a wi|ndow.s c|
|00001d10| 6c 6f 73 65 20 62 6f 78 | 2e 0d 0d a5 20 53 61 76 |lose box|.... Sav|
|00001d20| 65 c9 20 28 6f 72 20 11 | 2d 53 29 0d 0d 54 68 69 |e. (or .|-S)..Thi|
|00001d30| 73 20 63 6f 6d 6d 61 6e | 64 20 73 61 76 65 73 20 |s comman|d saves |
|00001d40| 74 68 65 20 63 6f 6e 74 | 65 6e 74 20 6f 66 20 74 |the cont|ent of t|
|00001d50| 68 65 20 61 63 74 69 76 | 65 20 77 69 6e 64 6f 77 |he activ|e window|
|00001d60| 20 74 6f 20 64 69 73 6b | 2e 20 54 68 65 20 61 63 | to disk|. The ac|
|00001d70| 74 69 6f 6e 20 74 61 6b | 65 6e 20 64 65 70 65 6e |tion tak|en depen|
|00001d80| 64 73 20 6f 6e 20 74 68 | 65 20 74 79 70 65 20 6f |ds on th|e type o|
|00001d90| 66 20 77 69 6e 64 6f 77 | 3a 0d 0d 49 66 20 69 74 |f window|:..If it|
|00001da0| 20 63 6f 6e 74 61 69 6e | 73 20 74 68 65 20 6f 75 | contain|s the ou|
|00001db0| 74 70 75 74 20 6f 66 20 | 61 20 73 65 71 75 65 6e |tput of |a sequen|
|00001dc0| 63 65 20 61 6e 61 6c 79 | 73 69 73 20 28 72 65 73 |ce analy|sis (res|
|00001dd0| 75 6c 74 73 20 77 69 6e | 64 6f 77 29 20 6f 72 20 |ults win|dow) or |
|00001de0| 64 6f 63 75 6d 65 6e 74 | 61 74 69 6f 6e 20 61 62 |document|ation ab|
|00001df0| 6f 75 74 20 61 20 64 61 | 74 61 62 61 73 65 20 65 |out a da|tabase e|
|00001e00| 6e 74 72 79 20 28 64 61 | 74 61 62 61 73 65 20 65 |ntry (da|tabase e|
|00001e10| 6e 74 72 79 20 77 69 6e | 64 6f 77 29 2c 20 74 68 |ntry win|dow), th|
|00001e20| 65 20 63 6f 6e 74 65 6e | 74 20 77 69 6c 6c 20 62 |e conten|t will b|
|00001e30| 65 20 73 61 76 65 64 20 | 61 73 20 61 20 74 65 78 |e saved |as a tex|
|00001e40| 74 20 66 69 6c 65 20 77 | 68 69 63 68 20 63 61 6e |t file w|hich can|
|00001e50| 20 62 65 20 6f 70 65 6e | 65 64 20 62 79 20 61 6e | be open|ed by an|
|00001e60| 79 20 77 6f 72 64 20 70 | 72 6f 63 65 73 73 6f 72 |y word p|rocessor|
|00001e70| 20 66 6f 72 20 66 75 72 | 74 68 65 72 20 6d 61 6e | for fur|ther man|
|00001e80| 69 70 75 6c 61 74 69 6f | 6e 2e 20 59 6f 75 20 63 |ipulatio|n. You c|
|00001e90| 61 6e 20 63 68 6f 6f 73 | 65 20 74 68 65 20 63 72 |an choos|e the cr|
|00001ea0| 65 61 74 6f 72 20 6f 66 | 20 74 68 65 20 74 65 78 |eator of| the tex|
|00001eb0| 74 20 66 69 6c 65 20 66 | 72 6f 6d 20 74 68 65 20 |t file f|rom the |
|00001ec0| 4f 70 74 69 6f 6e 73 20 | 6d 65 6e 75 2e 0d 20 0d |Options |menu.. .|
|00001ed0| 49 66 20 74 68 65 20 66 | 72 6f 6e 74 20 77 69 6e |If the f|ront win|
|00001ee0| 64 6f 77 20 69 73 20 61 | 20 64 61 74 61 62 61 73 |dow is a| databas|
|00001ef0| 65 20 62 72 6f 77 73 65 | 72 20 77 69 6e 64 6f 77 |e browse|r window|
|00001f00| 2c 20 53 61 76 65 20 77 | 69 6c 6c 20 73 61 76 65 |, Save w|ill save|
|00001f10| 20 74 68 65 20 63 75 72 | 72 65 6e 74 20 73 65 74 | the cur|rent set|
|00001f20| 20 73 74 61 74 75 73 2c | 20 69 2e 65 2e 20 69 6e | status,| i.e. in|
|00001f30| 66 6f 72 6d 61 74 69 6f | 6e 20 61 62 6f 75 74 20 |formatio|n about |
|00001f40| 74 68 65 20 65 6e 74 72 | 79 20 73 65 74 73 2c 20 |the entr|y sets, |
|00001f50| 74 68 65 20 63 75 72 72 | 65 6e 74 6c 79 20 61 63 |the curr|ently ac|
|00001f60| 74 69 76 65 20 73 65 74 | 20 61 6e 64 20 77 68 69 |tive set| and whi|
|00001f70| 63 68 20 65 6e 74 72 69 | 65 73 20 61 72 65 20 73 |ch entri|es are s|
|00001f80| 65 6c 65 63 74 65 64 20 | 28 73 65 65 20 68 65 6c |elected |(see hel|
|00001f90| 70 20 74 6f 70 69 63 20 | d4 45 6e 74 72 79 20 53 |p topic |.Entry S|
|00001fa0| 65 74 73 d5 29 2e 0d 0d | 54 68 69 73 20 63 6f 6d |ets.)...|This com|
|00001fb0| 6d 61 6e 64 20 69 73 20 | 6e 6f 74 20 61 76 61 69 |mand is |not avai|
|00001fc0| 6c 61 62 6c 65 20 69 66 | 20 74 68 65 20 66 72 6f |lable if| the fro|
|00001fd0| 6e 74 20 77 69 6e 64 6f | 77 20 69 73 20 61 20 73 |nt windo|w is a s|
|00001fe0| 65 71 75 65 6e 63 65 20 | 77 69 6e 64 6f 77 20 62 |equence |window b|
|00001ff0| 65 63 61 75 73 65 20 74 | 68 69 73 20 77 69 6e 64 |ecause t|his wind|
|00002000| 6f 77 20 74 79 70 65 20 | 63 61 6e 6e 6f 74 20 62 |ow type |cannot b|
|00002010| 65 20 6d 6f 64 69 66 69 | 65 64 2e 0d 0d a5 20 52 |e modifi|ed.... R|
|00002020| 65 76 65 72 74 0d 0d 54 | 68 69 73 20 63 6f 6d 6d |evert..T|his comm|
|00002030| 61 6e 64 20 69 73 20 6f | 6e 6c 79 20 61 76 61 69 |and is o|nly avai|
|00002040| 6c 61 62 6c 65 20 69 66 | 20 74 68 65 20 61 63 74 |lable if| the act|
|00002050| 69 76 65 20 77 69 6e 64 | 6f 77 20 69 73 20 61 20 |ive wind|ow is a |
|00002060| 64 61 74 61 62 61 73 65 | 20 62 72 6f 77 73 65 72 |database| browser|
|00002070| 20 77 69 6e 64 6f 77 2e | 20 49 74 20 72 65 76 65 | window.| It reve|
|00002080| 72 74 73 20 74 68 65 20 | 73 65 74 20 73 74 61 74 |rts the |set stat|
|00002090| 75 73 20 6f 66 20 74 68 | 65 20 64 61 74 61 62 61 |us of th|e databa|
|000020a0| 73 65 20 69 6e 64 65 78 | 20 66 69 6c 65 20 74 6f |se index| file to|
|000020b0| 20 74 68 65 20 6c 61 73 | 74 20 73 61 76 65 64 20 | the las|t saved |
|000020c0| 76 61 6c 75 65 73 20 28 | 73 65 65 20 68 65 6c 70 |values (|see help|
|000020d0| 20 74 6f 70 69 63 20 d4 | 45 6e 74 72 79 20 53 65 | topic .|Entry Se|
|000020e0| 74 73 d5 29 20 61 6e 64 | 20 64 69 73 63 61 72 64 |ts.) and| discard|
|000020f0| 73 20 61 6e 79 20 63 68 | 61 6e 67 65 73 20 73 69 |s any ch|anges si|
|00002100| 6e 63 65 20 74 68 65 6e | 2e 0d 0d a5 20 50 61 67 |nce then|.... Pag|
|00002110| 65 20 53 65 74 75 70 c9 | 0d 0d 50 72 65 73 65 6e |e Setup.|..Presen|
|00002120| 74 73 20 74 68 65 20 73 | 74 61 6e 64 61 72 64 20 |ts the s|tandard |
|00002130| 70 61 67 65 20 73 65 74 | 75 70 20 64 69 61 6c 6f |page set|up dialo|
|00002140| 67 20 77 68 69 63 68 20 | 6c 65 74 73 20 79 6f 75 |g which |lets you|
|00002150| 20 73 65 6c 65 63 74 20 | 70 61 70 65 72 20 73 69 | select |paper si|
|00002160| 7a 65 2c 20 6f 72 69 65 | 6e 74 61 74 69 6f 6e 20 |ze, orie|ntation |
|00002170| 61 6e 64 20 73 65 76 65 | 72 61 6c 20 70 72 69 6e |and seve|ral prin|
|00002180| 74 65 72 2d 73 70 65 63 | 69 66 69 63 20 6f 70 74 |ter-spec|ific opt|
|00002190| 69 6f 6e 73 2e 20 53 65 | 65 20 79 6f 75 72 20 4d |ions. Se|e your M|
|000021a0| 61 63 69 6e 74 6f 73 68 | 20 6f 77 6e 65 72 d5 73 |acintosh| owner.s|
|000021b0| 20 6d 61 6e 75 61 6c 20 | 66 6f 72 20 64 65 74 61 | manual |for deta|
|000021c0| 69 6c 73 2e 0d 0d 00 a5 | 20 50 72 69 6e 74 c9 20 |ils.....| Print. |
|000021d0| 28 6f 72 20 11 2d 50 29 | 0d 0d 54 68 69 73 20 63 |(or .-P)|..This c|
|000021e0| 6f 6d 6d 61 6e 64 20 6c | 65 74 73 20 79 6f 75 20 |ommand l|ets you |
|000021f0| 70 72 69 6e 74 20 74 68 | 65 20 63 6f 6e 74 65 6e |print th|e conten|
|00002200| 74 20 6f 66 20 74 68 65 | 20 61 63 74 69 76 65 20 |t of the| active |
|00002210| 77 69 6e 64 6f 77 2e 20 | 54 68 65 20 50 72 69 6e |window. |The Prin|
|00002220| 74 20 63 6f 6d 6d 61 6e | 64 20 69 73 20 6e 6f 74 |t comman|d is not|
|00002230| 20 61 76 61 69 6c 61 62 | 6c 65 20 66 6f 72 20 73 | availab|le for s|
|00002240| 65 71 75 65 6e 63 65 20 | 77 69 6e 64 6f 77 73 20 |equence |windows |
|00002250| 61 6e 64 20 64 61 74 61 | 62 61 73 65 20 62 72 6f |and data|base bro|
|00002260| 77 73 65 72 20 77 69 6e | 64 6f 77 73 2e 20 45 61 |wser win|dows. Ea|
|00002270| 63 68 20 70 61 67 65 20 | 6f 66 20 74 68 65 20 70 |ch page |of the p|
|00002280| 72 69 6e 74 6f 75 74 20 | 68 61 73 20 61 20 68 65 |rintout |has a he|
|00002290| 61 64 65 72 20 77 69 74 | 68 20 74 68 65 20 77 69 |ader wit|h the wi|
|000022a0| 6e 64 6f 77 20 6e 61 6d | 65 20 61 6e 64 20 74 68 |ndow nam|e and th|
|000022b0| 65 20 70 61 67 65 20 6e | 75 6d 62 65 72 20 61 6e |e page n|umber an|
|000022c0| 64 20 61 20 66 6f 6f 74 | 65 72 20 73 68 6f 77 69 |d a foot|er showi|
|000022d0| 6e 67 20 74 68 65 20 70 | 72 6f 67 72 61 6d 20 6e |ng the p|rogram n|
|000022e0| 61 6d 65 20 61 6e 64 20 | 74 68 65 20 63 75 72 72 |ame and |the curr|
|000022f0| 65 6e 74 20 64 61 74 65 | 20 61 6e 64 20 74 69 6d |ent date| and tim|
|00002300| 65 2e 20 54 6f 20 69 6e | 74 65 72 72 75 70 74 20 |e. To in|terrupt |
|00002310| 70 72 69 6e 74 69 6e 67 | 2c 20 70 72 65 73 73 20 |printing|, press |
|00002320| 11 2d 50 65 72 69 6f 64 | 20 6f 72 20 45 73 63 61 |.-Period| or Esca|
|00002330| 70 65 2e 0d 0d a5 20 51 | 75 69 74 20 28 6f 72 20 |pe.... Q|uit (or |
|00002340| 11 2d 51 29 0d 0d 54 68 | 69 73 20 63 6f 6d 6d 61 |.-Q)..Th|is comma|
|00002350| 6e 64 20 74 65 72 6d 69 | 6e 61 74 65 73 20 4d 61 |nd termi|nates Ma|
|00002360| 63 50 61 74 74 65 72 6e | 20 61 6e 64 20 67 65 74 |cPattern| and get|
|00002370| 73 20 79 6f 75 20 62 61 | 63 6b 20 74 6f 20 74 68 |s you ba|ck to th|
|00002380| 65 20 46 69 6e 64 65 72 | 2e 20 49 66 20 74 68 65 |e Finder|. If the|
|00002390| 20 d2 43 6f 6e 66 69 72 | 6d 20 63 68 61 6e 67 65 | .Confir|m change|
|000023a0| 73 d3 20 6f 70 74 69 6f | 6e 20 66 72 6f 6d 20 74 |s. optio|n from t|
|000023b0| 68 65 20 d2 47 65 6e 65 | 72 61 6c 20 4f 70 74 69 |he .Gene|ral Opti|
|000023c0| 6f 6e 73 d3 20 64 69 61 | 6c 6f 67 20 62 6f 78 20 |ons. dia|log box |
|000023d0| 69 73 20 6f 6e 2c 20 74 | 68 65 6e 20 66 6f 72 20 |is on, t|hen for |
|000023e0| 65 61 63 68 20 77 69 6e | 64 6f 77 20 77 68 6f 73 |each win|dow whos|
|000023f0| 65 20 63 6f 6e 74 65 6e | 74 20 68 61 73 20 63 68 |e conten|t has ch|
|00002400| 61 6e 67 65 64 20 73 69 | 6e 63 65 20 69 74 20 77 |anged si|nce it w|
|00002410| 61 73 20 6c 61 73 74 20 | 73 61 76 65 64 2c 20 4d |as last |saved, M|
|00002420| 61 63 50 61 74 74 65 72 | 6e 20 61 73 6b 73 20 79 |acPatter|n asks y|
|00002430| 6f 75 20 74 6f 20 73 61 | 76 65 20 6f 72 20 64 69 |ou to sa|ve or di|
|00002440| 73 63 61 72 64 20 63 68 | 61 6e 67 65 73 20 6f 72 |scard ch|anges or|
|00002450| 20 74 6f 20 69 6e 74 65 | 72 72 75 70 74 20 74 68 | to inte|rrupt th|
|00002460| 65 20 51 75 69 74 20 63 | 6f 6d 6d 61 6e 64 2e 20 |e Quit c|ommand. |
|00002470| 43 68 61 6e 67 65 73 20 | 61 72 65 20 64 69 73 63 |Changes |are disc|
|00002480| 61 72 64 65 64 20 77 69 | 74 68 6f 75 74 20 70 72 |arded wi|thout pr|
|00002490| 6f 6d 70 74 69 6e 67 20 | 69 66 20 74 68 65 20 53 |ompting |if the S|
|000024a0| 68 69 66 74 20 6b 65 79 | 20 69 73 20 68 65 6c 64 |hift key| is held|
|000024b0| 20 64 6f 77 6e 20 77 68 | 65 6e 20 51 75 69 74 20 | down wh|en Quit |
|000024c0| 69 73 20 63 68 6f 73 65 | 6e 2e 00 00 07 6d 4e 6f |is chose|n....mNo|
|000024d0| 74 65 3a 20 43 6f 6d 6d | 61 6e 64 2d 6b 65 79 20 |te: Comm|and-key |
|000024e0| 65 71 75 69 76 61 6c 65 | 6e 74 73 20 6f 66 20 74 |equivale|nts of t|
|000024f0| 68 65 20 43 75 74 2c 20 | 43 6f 70 79 2c 20 50 61 |he Cut, |Copy, Pa|
|00002500| 73 74 65 20 61 6e 64 20 | 43 6c 65 61 72 20 63 6f |ste and |Clear co|
|00002510| 6d 6d 61 6e 64 73 20 61 | 72 65 20 61 76 61 69 6c |mmands a|re avail|
|00002520| 61 62 6c 65 20 69 6e 20 | 64 69 61 6c 6f 67 20 62 |able in |dialog b|
|00002530| 6f 78 65 73 20 61 6e 64 | 20 63 61 6e 20 62 65 20 |oxes and| can be |
|00002540| 75 73 65 64 20 74 6f 20 | 69 6e 73 65 72 74 20 74 |used to |insert t|
|00002550| 65 78 74 20 69 6e 74 6f | 20 6f 72 20 6d 6f 76 65 |ext into| or move|
|00002560| 20 74 65 78 74 20 61 72 | 6f 75 6e 64 20 74 65 78 | text ar|ound tex|
|00002570| 74 20 65 64 69 74 20 66 | 69 65 6c 64 73 20 69 6e |t edit f|ields in|
|00002580| 20 64 69 61 6c 6f 67 20 | 62 6f 78 65 73 2e 0d 0d | dialog |boxes...|
|00002590| a5 20 55 6e 64 6f 20 28 | 6f 72 20 11 2d 5a 29 0d |. Undo (|or .-Z).|
|000025a0| 0d 54 68 69 73 20 63 6f | 6d 6d 61 6e 64 20 69 73 |.This co|mmand is|
|000025b0| 20 6e 6f 74 20 69 6d 70 | 6c 65 6d 65 6e 74 65 64 | not imp|lemented|
|000025c0| 20 69 6e 20 74 68 65 20 | 63 75 72 72 65 6e 74 20 | in the |current |
|000025d0| 76 65 72 73 69 6f 6e 20 | 6f 66 20 4d 61 63 50 61 |version |of MacPa|
|000025e0| 74 74 65 72 6e 20 61 6e | 64 20 74 68 65 72 65 66 |ttern an|d theref|
|000025f0| 6f 72 65 20 64 69 6d 6d | 65 64 2e 0d 0d a5 20 43 |ore dimm|ed.... C|
|00002600| 75 74 20 28 6f 72 20 11 | 2d 58 29 0d 0d 54 68 69 |ut (or .|-X)..Thi|
|00002610| 73 20 63 6f 6d 6d 61 6e | 64 20 69 73 20 6f 6e 6c |s comman|d is onl|
|00002620| 79 20 61 76 61 69 6c 61 | 62 6c 65 20 69 6e 20 64 |y availa|ble in d|
|00002630| 69 61 6c 6f 67 20 62 6f | 78 65 73 2e 0d 0d a5 20 |ialog bo|xes.... |
|00002640| 43 6f 70 79 20 28 6f 72 | 20 11 2d 43 29 0d 0d 54 |Copy (or| .-C)..T|
|00002650| 68 69 73 20 63 6f 6d 6d | 61 6e 64 20 63 6f 70 69 |his comm|and copi|
|00002660| 65 73 20 73 65 6c 65 63 | 74 65 64 20 74 65 78 74 |es selec|ted text|
|00002670| 20 66 72 6f 6d 20 61 20 | 72 65 73 75 6c 74 73 20 | from a |results |
|00002680| 6f 72 20 64 61 74 61 62 | 61 73 65 20 65 6e 74 72 |or datab|ase entr|
|00002690| 79 20 77 69 6e 64 6f 77 | 20 61 6e 64 20 70 6c 61 |y window| and pla|
|000026a0| 63 65 73 20 69 74 20 69 | 6e 20 74 68 65 20 43 6c |ces it i|n the Cl|
|000026b0| 69 70 62 6f 61 72 64 2e | 20 49 74 20 72 65 70 6c |ipboard.| It repl|
|000026c0| 61 63 65 73 20 74 68 65 | 20 63 75 72 72 65 6e 74 |aces the| current|
|000026d0| 20 63 6f 6e 74 65 6e 74 | 73 20 6f 66 20 74 68 65 | content|s of the|
|000026e0| 20 43 6c 69 70 62 6f 61 | 72 64 20 28 69 66 20 74 | Clipboa|rd (if t|
|000026f0| 68 65 72 65 20 61 72 65 | 20 61 6e 79 29 2e 54 68 |here are| any).Th|
|00002700| 69 73 20 63 6f 6d 6d 61 | 6e 64 20 63 61 6e 20 62 |is comma|nd can b|
|00002710| 65 20 75 73 65 64 20 74 | 6f 20 74 72 61 6e 73 66 |e used t|o transf|
|00002720| 65 72 20 74 65 78 74 20 | 66 72 6f 6d 20 4d 61 63 |er text |from Mac|
|00002730| 50 61 74 74 65 72 6e 20 | 74 6f 20 6f 74 68 65 72 |Pattern |to other|
|00002740| 20 70 72 6f 67 72 61 6d | 73 2e 0d 0d a5 20 50 61 | program|s.... Pa|
|00002750| 73 74 65 20 28 6f 72 20 | 11 2d 56 29 0d 0d 54 68 |ste (or |.-V)..Th|
|00002760| 69 73 20 63 6f 6d 6d 61 | 6e 64 20 69 73 20 6f 6e |is comma|nd is on|
|00002770| 6c 79 20 61 76 61 69 6c | 61 62 6c 65 20 69 6e 20 |ly avail|able in |
|00002780| 64 69 61 6c 6f 67 20 62 | 6f 78 65 73 2e 20 49 74 |dialog b|oxes. It|
|00002790| 20 63 61 6e 20 62 65 20 | 75 73 65 64 20 74 6f 20 | can be |used to |
|000027a0| 69 6e 73 65 72 74 20 74 | 65 78 74 2c 20 65 2e 67 |insert t|ext, e.g|
|000027b0| 2e 20 70 61 74 74 65 72 | 6e 20 64 65 73 63 72 69 |. patter|n descri|
|000027c0| 70 74 69 6f 6e 73 2c 20 | 66 72 6f 6d 20 6f 74 68 |ptions, |from oth|
|000027d0| 65 72 20 70 72 6f 67 72 | 61 6d 73 20 69 6e 74 6f |er progr|ams into|
|000027e0| 20 4d 61 63 50 61 74 74 | 65 72 6e d5 73 20 64 69 | MacPatt|ern.s di|
|000027f0| 61 6c 6f 67 73 2e 0d 0d | a5 20 43 6c 65 61 72 0d |alogs...|. Clear.|
|00002800| 0d 54 68 69 73 20 63 6f | 6d 6d 61 6e 64 20 69 73 |.This co|mmand is|
|00002810| 20 6f 6e 6c 79 20 61 76 | 61 69 6c 61 62 6c 65 20 | only av|ailable |
|00002820| 69 6e 20 64 69 61 6c 6f | 67 20 62 6f 78 65 73 2e |in dialo|g boxes.|
|00002830| 0d 0d a5 20 53 65 6c 65 | 63 74 20 41 6c 6c 20 28 |... Sele|ct All (|
|00002840| 6f 72 20 11 2d 41 29 0d | 0d 54 68 69 73 20 63 6f |or .-A).|.This co|
|00002850| 6d 6d 61 6e 64 20 73 65 | 6c 65 63 74 73 20 61 6c |mmand se|lects al|
|00002860| 6c 20 74 65 78 74 20 6f | 72 20 61 6c 6c 20 65 6e |l text o|r all en|
|00002870| 74 72 69 65 73 20 69 6e | 20 74 68 65 20 63 75 72 |tries in| the cur|
|00002880| 72 65 6e 74 6c 79 20 61 | 63 74 69 76 65 20 77 69 |rently a|ctive wi|
|00002890| 6e 64 6f 77 2e 0d 0d 00 | a5 20 53 65 6c 65 63 74 |ndow....|. Select|
|000028a0| 20 4e 6f 6e 65 0d 0d 54 | 68 69 73 20 63 6f 6d 6d | None..T|his comm|
|000028b0| 61 6e 64 20 64 65 73 65 | 6c 65 63 74 73 20 61 6c |and dese|lects al|
|000028c0| 6c 20 74 65 78 74 20 6f | 72 20 61 6c 6c 20 65 6e |l text o|r all en|
|000028d0| 74 72 69 65 73 20 69 6e | 20 74 68 65 20 63 75 72 |tries in| the cur|
|000028e0| 72 65 6e 74 6c 79 20 61 | 63 74 69 76 65 20 77 69 |rently a|ctive wi|
|000028f0| 6e 64 6f 77 2e 0d 0d a5 | 20 52 65 6e 61 6d 65 20 |ndow....| Rename |
|00002900| 53 65 74 c9 0d 0d 54 68 | 69 73 20 63 6f 6d 6d 61 |Set...Th|is comma|
|00002910| 6e 64 20 61 6c 6c 6f 77 | 73 20 79 6f 75 20 74 6f |nd allow|s you to|
|00002920| 20 72 65 6e 61 6d 65 20 | 74 68 65 20 63 75 72 72 | rename |the curr|
|00002930| 65 6e 74 6c 79 20 61 63 | 74 69 76 65 20 65 6e 74 |ently ac|tive ent|
|00002940| 72 79 20 73 65 74 20 6f | 66 20 61 20 64 61 74 61 |ry set o|f a data|
|00002950| 62 61 73 65 20 66 69 6c | 65 2e 20 54 6f 20 6c 65 |base fil|e. To le|
|00002960| 61 72 6e 20 6d 6f 72 65 | 20 61 62 6f 75 74 20 65 |arn more| about e|
|00002970| 6e 74 72 79 20 73 65 74 | 73 2c 20 73 65 65 20 74 |ntry set|s, see t|
|00002980| 68 65 20 68 65 6c 70 20 | 74 6f 70 69 63 20 d4 45 |he help |topic .E|
|00002990| 6e 74 72 79 20 53 65 74 | 73 d5 2e 0d 0d 45 6e 74 |ntry Set|s....Ent|
|000029a0| 65 72 20 74 68 65 20 6e | 65 77 20 6e 61 6d 65 20 |er the n|ew name |
|000029b0| 66 6f 72 20 74 68 65 20 | 63 75 72 72 65 6e 74 20 |for the |current |
|000029c0| 73 65 74 20 28 6d 61 78 | 69 6d 75 6d 20 6f 66 20 |set (max|imum of |
|000029d0| 31 35 20 63 68 61 72 61 | 63 74 65 72 73 29 20 61 |15 chara|cters) a|
|000029e0| 6e 64 20 63 6c 69 63 6b | 20 4f 4b 2e 20 43 6c 69 |nd click| OK. Cli|
|000029f0| 63 6b 69 6e 67 20 74 68 | 65 20 43 61 6e 63 65 6c |cking th|e Cancel|
|00002a00| 20 62 75 74 74 6f 6e 20 | 6c 65 61 76 65 73 20 74 | button |leaves t|
|00002a10| 68 65 20 63 75 72 72 65 | 6e 74 20 73 65 74 20 75 |he curre|nt set u|
|00002a20| 6e 63 68 61 6e 67 65 64 | 2e 0d 0d a5 20 53 65 6c |nchanged|.... Sel|
|00002a30| 65 63 74 20 53 65 74 c9 | 0d 0d 55 73 65 20 74 68 |ect Set.|..Use th|
|00002a40| 69 73 20 6d 65 6e 75 20 | 63 6f 6d 6d 61 6e 64 20 |is menu |command |
|00002a50| 74 6f 20 73 65 6c 65 63 | 74 20 61 6e 79 20 6f 66 |to selec|t any of|
|00002a60| 20 74 68 65 20 65 69 67 | 68 74 20 61 76 61 69 6c | the eig|ht avail|
|00002a70| 61 62 6c 65 20 65 6e 74 | 72 79 20 73 65 74 73 20 |able ent|ry sets |
|00002a80| 28 73 65 65 20 68 65 6c | 70 20 74 6f 70 69 63 20 |(see hel|p topic |
|00002a90| d4 45 6e 74 72 79 20 53 | 65 74 73 d5 29 2e 0d 0d |.Entry S|ets.)...|
|00002aa0| 54 6f 20 73 65 6c 65 63 | 74 20 61 20 64 69 66 66 |To selec|t a diff|
|00002ab0| 65 72 65 6e 74 20 6f 6e | 65 2c 20 6a 75 73 74 20 |erent on|e, just |
|00002ac0| 63 6c 69 63 6b 20 6f 6e | 20 74 68 65 20 62 6f 78 |click on| the box|
|00002ad0| 20 74 68 61 74 20 63 6f | 6e 74 61 69 6e 73 20 74 | that co|ntains t|
|00002ae0| 68 65 20 6e 61 6d 65 20 | 6f 66 20 74 68 65 20 63 |he name |of the c|
|00002af0| 75 72 72 65 6e 74 20 73 | 65 74 20 61 6e 64 20 68 |urrent s|et and h|
|00002b00| 6f 6c 64 20 64 6f 77 6e | 20 74 68 65 20 6d 6f 75 |old down| the mou|
|00002b10| 73 65 20 62 75 74 74 6f | 6e 2e 20 41 20 70 6f 70 |se butto|n. A pop|
|00002b20| 2d 75 70 20 6d 65 6e 75 | 20 61 70 70 65 61 72 73 |-up menu| appears|
|00002b30| 20 77 68 69 63 68 20 6c | 69 73 74 73 20 61 6c 6c | which l|ists all|
|00002b40| 20 61 76 61 69 6c 61 62 | 6c 65 20 65 6e 74 72 79 | availab|le entry|
|00002b50| 20 73 65 74 73 0d 0d 00 | 53 65 6c 65 63 74 20 61 | sets...|Select a|
|00002b60| 20 73 65 74 20 66 72 6f | 6d 20 74 68 69 73 20 6c | set fro|m this l|
|00002b70| 69 73 74 20 61 6e 64 20 | 63 6c 69 63 6b 20 74 68 |ist and |click th|
|00002b80| 65 20 4f 4b 20 62 75 74 | 74 6f 6e 2c 20 6f 72 20 |e OK but|ton, or |
|00002b90| 63 6c 69 63 6b 20 43 61 | 6e 63 65 6c 20 74 6f 20 |click Ca|ncel to |
|00002ba0| 6c 65 61 76 65 20 74 68 | 65 20 64 69 61 6c 6f 67 |leave th|e dialog|
|00002bb0| 20 77 69 74 68 6f 75 74 | 20 63 68 61 6e 67 69 6e | without| changin|
|00002bc0| 67 20 74 68 65 20 63 75 | 72 72 65 6e 74 20 73 65 |g the cu|rrent se|
|00002bd0| 74 2e 0d 0d 41 20 71 75 | 69 63 6b 65 72 20 77 61 |t...A qu|icker wa|
|00002be0| 79 20 6f 66 20 63 68 61 | 6e 67 69 6e 67 20 73 65 |y of cha|nging se|
|00002bf0| 74 73 20 69 73 20 74 6f | 20 75 73 65 20 74 68 65 |ts is to| use the|
|00002c00| 20 70 6f 70 2d 75 70 20 | 6d 65 6e 75 20 69 6e 20 | pop-up |menu in |
|00002c10| 61 20 64 61 74 61 62 61 | 73 65 20 62 72 6f 77 73 |a databa|se brows|
|00002c20| 65 72 20 77 69 6e 64 6f | 77 20 28 73 65 65 20 d4 |er windo|w (see .|
|00002c30| 57 69 6e 64 6f 77 73 d5 | 29 2e 20 00 00 02 1e 54 |Windows.|). ....T|
|00002c40| 68 69 73 20 6d 65 6e 75 | 20 63 61 6e 20 62 65 20 |his menu| can be |
|00002c50| 75 73 65 64 20 74 6f 20 | 73 77 69 74 63 68 20 62 |used to |switch b|
|00002c60| 65 74 77 65 65 6e 20 77 | 69 6e 64 6f 77 73 20 71 |etween w|indows q|
|00002c70| 75 69 63 6b 6c 79 2e 20 | 4f 70 65 6e 69 6e 67 20 |uickly. |Opening |
|00002c80| 61 20 6e 65 77 20 77 69 | 6e 64 6f 77 20 61 64 64 |a new wi|ndow add|
|00002c90| 73 20 69 74 73 20 6e 61 | 6d 65 20 74 6f 20 74 68 |s its na|me to th|
|00002ca0| 65 20 62 6f 74 74 6f 6d | 20 6f 66 20 74 68 65 20 |e bottom| of the |
|00002cb0| 57 69 6e 64 6f 77 73 20 | 6d 65 6e 75 2c 20 63 6c |Windows |menu, cl|
|00002cc0| 6f 73 69 6e 67 20 61 20 | 77 69 6e 64 6f 77 20 72 |osing a |window r|
|00002cd0| 65 6d 6f 76 65 73 20 69 | 74 73 20 6e 61 6d 65 20 |emoves i|ts name |
|00002ce0| 66 72 6f 6d 20 74 68 65 | 20 6c 69 73 74 2e 20 54 |from the| list. T|
|00002cf0| 68 65 20 63 75 72 72 65 | 6e 74 6c 79 20 61 63 74 |he curre|ntly act|
|00002d00| 69 76 65 20 77 69 6e 64 | 6f 77 20 69 73 20 69 6e |ive wind|ow is in|
|00002d10| 64 69 63 61 74 65 64 20 | 62 79 20 61 20 63 68 65 |dicated |by a che|
|00002d20| 63 6b 6d 61 72 6b 20 74 | 6f 20 74 68 65 20 6c 65 |ckmark t|o the le|
|00002d30| 66 74 20 6f 66 20 69 74 | 73 20 6e 61 6d 65 2e 20 |ft of it|s name. |
|00002d40| 54 68 65 20 57 69 6e 64 | 6f 77 73 20 6d 65 6e 75 |The Wind|ows menu|
|00002d50| 20 69 73 20 70 61 72 74 | 69 63 75 6c 61 72 6c 79 | is part|icularly|
|00002d60| 20 75 73 65 66 75 6c 20 | 69 66 20 6d 61 6e 79 20 | useful |if many |
|00002d70| 77 69 6e 64 6f 77 73 20 | 61 72 65 20 6f 70 65 6e |windows |are open|
|00002d80| 20 61 6e 64 20 73 6f 6d | 65 20 61 72 65 20 63 6f | and som|e are co|
|00002d90| 76 65 72 65 64 20 63 6f | 6d 70 6c 65 74 65 6c 79 |vered co|mpletely|
|00002da0| 20 62 79 20 6f 74 68 65 | 72 73 2e 0d 0d a5 20 52 | by othe|rs.... R|
|00002db0| 6f 74 61 74 65 20 28 6f | 72 20 11 2d 52 29 0d 0d |otate (o|r .-R)..|
|00002dc0| 54 68 69 73 20 63 6f 6d | 6d 61 6e 64 20 6d 6f 76 |This com|mand mov|
|00002dd0| 65 73 20 74 68 65 20 66 | 72 6f 6e 74 20 77 69 6e |es the f|ront win|
|00002de0| 64 6f 77 20 74 6f 20 74 | 68 65 20 62 61 63 6b 20 |dow to t|he back |
|00002df0| 61 6e 64 20 61 63 74 69 | 76 61 74 65 73 20 74 68 |and acti|vates th|
|00002e00| 65 20 6e 65 78 74 20 77 | 69 6e 64 6f 77 2e 20 52 |e next w|indow. R|
|00002e10| 65 70 65 61 74 65 64 20 | 75 73 65 20 6f 66 20 74 |epeated |use of t|
|00002e20| 68 65 20 52 6f 74 61 74 | 65 20 63 6f 6d 6d 61 6e |he Rotat|e comman|
|00002e30| 64 20 63 69 72 63 6c 65 | 73 20 74 68 72 6f 75 67 |d circle|s throug|
|00002e40| 68 20 61 6c 6c 20 77 69 | 6e 64 6f 77 73 20 63 75 |h all wi|ndows cu|
|00002e50| 72 72 65 6e 74 6c 79 20 | 6f 70 65 6e 2e 00 00 02 |rrently |open....|
|00002e60| 07 44 6f 75 62 6c 65 2d | 63 6c 69 63 6b 69 6e 67 |.Double-|clicking|
|00002e70| 20 61 20 64 61 74 61 62 | 61 73 65 20 65 6e 74 72 | a datab|ase entr|
|00002e80| 79 20 69 6e 20 74 68 65 | 20 62 72 6f 77 73 65 72 |y in the| browser|
|00002e90| 20 77 69 6e 64 6f 77 20 | 6f 70 65 6e 73 20 61 20 | window |opens a |
|00002ea0| 6e 65 77 20 77 69 6e 64 | 6f 77 20 74 68 61 74 20 |new wind|ow that |
|00002eb0| 64 69 73 70 6c 61 79 73 | 20 61 6c 6c 20 69 6e 66 |displays| all inf|
|00002ec0| 6f 72 6d 61 74 69 6f 6e | 20 6f 6e 20 74 68 69 73 |ormation| on this|
|00002ed0| 20 70 61 72 74 69 63 75 | 6c 61 72 20 70 61 74 74 | particu|lar patt|
|00002ee0| 65 72 6e 20 6f 72 20 62 | 6c 6f 63 6b 2e 20 4d 61 |ern or b|lock. Ma|
|00002ef0| 63 50 61 74 74 65 72 6e | 20 77 69 6c 6c 20 72 65 |cPattern| will re|
|00002f00| 61 64 20 74 68 69 73 20 | 69 6e 66 6f 72 6d 61 74 |ad this |informat|
|00002f10| 69 6f 6e 20 66 72 6f 6d | 20 74 68 65 20 64 61 74 |ion from| the dat|
|00002f20| 61 62 61 73 65 20 2e 64 | 61 74 20 61 6e 64 20 2e |abase .d|at and .|
|00002f30| 64 6f 63 20 66 69 6c 65 | 73 2c 20 69 66 20 61 76 |doc file|s, if av|
|00002f40| 61 69 6c 61 62 6c 65 2e | 0d 0d 54 68 69 73 20 69 |ailable.|..This i|
|00002f50| 73 20 61 20 73 74 61 6e | 64 61 72 64 20 4d 61 63 |s a stan|dard Mac|
|00002f60| 69 6e 74 6f 73 68 20 77 | 69 6e 64 6f 77 2c 20 69 |intosh w|indow, i|
|00002f70| 6e 63 6c 75 64 69 6e 67 | 20 73 63 72 6f 6c 6c 20 |ncluding| scroll |
|00002f80| 62 61 72 73 2c 20 63 6c | 6f 73 65 2c 20 67 72 6f |bars, cl|ose, gro|
|00002f90| 77 20 61 6e 64 20 7a 6f | 6f 6d 20 62 6f 78 2e 20 |w and zo|om box. |
|00002fa0| 59 6f 75 20 63 61 6e 20 | 73 65 6c 65 63 74 20 61 |You can |select a|
|00002fb0| 6e 79 20 74 65 78 74 20 | 66 6f 72 20 63 6f 70 79 |ny text |for copy|
|00002fc0| 69 6e 67 20 74 6f 20 74 | 68 65 20 43 6c 69 70 62 |ing to t|he Clipb|
|00002fd0| 6f 61 72 64 2c 20 62 75 | 74 20 74 68 65 20 63 6f |oard, bu|t the co|
|00002fe0| 6e 74 65 6e 74 20 6f 66 | 20 74 68 65 20 77 69 6e |ntent of| the win|
|00002ff0| 64 6f 77 20 63 61 6e 6e | 6f 74 20 62 65 20 6d 6f |dow cann|ot be mo|
|00003000| 64 69 66 69 65 64 2e 0d | 0d 59 6f 75 20 6d 61 79 |dified..|.You may|
|00003010| 20 73 61 76 65 20 74 68 | 65 20 64 6f 63 75 6d 65 | save th|e docume|
|00003020| 6e 74 61 74 69 6f 6e 20 | 74 6f 20 64 69 73 6b 20 |ntation |to disk |
|00003030| 6f 72 20 70 72 69 6e 74 | 20 69 74 2c 20 62 79 20 |or print| it, by |
|00003040| 73 65 6c 65 63 74 69 6e | 67 20 74 68 65 20 61 70 |selectin|g the ap|
|00003050| 70 72 6f 70 72 69 61 74 | 65 20 6d 65 6e 75 20 6f |propriat|e menu o|
|00003060| 70 74 69 6f 6e 73 2e 0d | 00 00 02 a1 54 68 69 73 |ptions..|....This|
|00003070| 20 77 69 6e 64 6f 77 20 | 69 73 20 6f 70 65 6e 65 | window |is opene|
|00003080| 64 20 61 74 20 74 68 65 | 20 65 6e 64 20 6f 66 20 |d at the| end of |
|00003090| 61 20 70 61 74 74 65 72 | 6e 20 6f 72 20 62 6c 6f |a patter|n or blo|
|000030a0| 63 6b 20 73 65 61 72 63 | 68 20 61 6e 64 20 64 69 |ck searc|h and di|
|000030b0| 73 70 6c 61 79 73 20 74 | 68 65 20 72 65 73 75 6c |splays t|he resul|
|000030c0| 74 73 20 6f 66 20 74 68 | 69 73 20 73 65 61 72 63 |ts of th|is searc|
|000030d0| 68 2e 0d 0d 4c 69 6b 65 | 20 74 68 65 20 64 61 74 |h...Like| the dat|
|000030e0| 61 62 61 73 65 20 65 6e | 74 72 79 2c 20 74 68 65 |abase en|try, the|
|000030f0| 20 72 65 73 75 6c 74 73 | 20 77 69 6e 64 6f 77 20 | results| window |
|00003100| 69 73 20 61 20 73 74 61 | 6e 64 61 72 64 20 4d 61 |is a sta|ndard Ma|
|00003110| 63 69 6e 74 6f 73 68 20 | 77 69 6e 64 6f 77 2c 20 |cintosh |window, |
|00003120| 69 6e 63 6c 75 64 69 6e | 67 20 73 63 72 6f 6c 6c |includin|g scroll|
|00003130| 20 62 61 72 73 2c 20 63 | 6c 6f 73 65 2c 20 67 72 | bars, c|lose, gr|
|00003140| 6f 77 20 61 6e 64 20 7a | 6f 6f 6d 20 62 6f 78 2e |ow and z|oom box.|
|00003150| 20 59 6f 75 20 63 61 6e | 20 73 65 6c 65 63 74 20 | You can| select |
|00003160| 61 6e 79 20 74 65 78 74 | 20 66 6f 72 20 63 6f 70 |any text| for cop|
|00003170| 79 69 6e 67 20 74 6f 20 | 74 68 65 20 43 6c 69 70 |ying to |the Clip|
|00003180| 62 6f 61 72 64 2c 20 62 | 75 74 20 74 68 65 20 63 |board, b|ut the c|
|00003190| 6f 6e 74 65 6e 74 20 6f | 66 20 74 68 65 20 77 69 |ontent o|f the wi|
|000031a0| 6e 64 6f 77 20 63 61 6e | 6e 6f 74 20 62 65 20 6d |ndow can|not be m|
|000031b0| 6f 64 69 66 69 65 64 2e | 0d 0d 59 6f 75 20 6d 61 |odified.|..You ma|
|000031c0| 79 20 61 6c 73 6f 20 73 | 61 76 65 20 74 68 65 20 |y also s|ave the |
|000031d0| 72 65 73 75 6c 74 73 20 | 74 6f 20 64 69 73 6b 20 |results |to disk |
|000031e0| 6f 72 20 70 72 69 6e 74 | 20 74 68 65 6d 2c 20 62 |or print| them, b|
|000031f0| 79 20 73 65 6c 65 63 74 | 69 6e 67 20 74 68 65 20 |y select|ing the |
|00003200| 61 70 70 72 6f 70 72 69 | 61 74 65 20 6d 65 6e 75 |appropri|ate menu|
|00003210| 20 6f 70 74 69 6f 6e 73 | 2e 0d 0d 4e 6f 74 65 3a | options|...Note:|
|00003220| 20 4d 61 63 50 61 74 74 | 65 72 6e 20 75 73 65 73 | MacPatt|ern uses|
|00003230| 20 74 68 65 20 54 65 78 | 74 45 64 69 74 20 72 6f | the Tex|tEdit ro|
|00003240| 75 74 69 6e 65 73 20 6f | 66 20 74 68 65 20 4d 61 |utines o|f the Ma|
|00003250| 63 69 6e 74 6f 73 68 20 | 54 6f 6f 6c 62 6f 78 20 |cintosh |Toolbox |
|00003260| 74 6f 20 64 69 73 70 6c | 61 79 20 74 68 65 20 72 |to displ|ay the r|
|00003270| 65 73 75 6c 74 73 2e 20 | 54 68 69 73 20 72 6f 75 |esults. |This rou|
|00003280| 74 69 6e 65 73 20 63 61 | 6e 20 68 61 6e 64 6c 65 |tines ca|n handle|
|00003290| 20 61 20 6d 61 78 69 6d | 75 6d 20 6f 66 20 33 32 | a maxim|um of 32|
|000032a0| 4b 20 62 79 74 65 73 2e | 20 54 68 65 72 65 66 6f |K bytes.| Therefo|
|000032b0| 72 65 2c 20 61 6e 79 20 | 72 65 73 75 6c 74 73 20 |re, any |results |
|000032c0| 77 68 69 63 68 20 61 72 | 65 20 62 69 67 67 65 72 |which ar|e bigger|
|000032d0| 20 74 68 61 6e 20 33 32 | 4b 20 63 61 6e 6e 6f 74 | than 32|K cannot|
|000032e0| 20 62 65 20 64 69 73 70 | 6c 61 79 65 64 20 61 6e | be disp|layed an|
|000032f0| 64 20 61 72 65 20 73 61 | 76 65 64 20 74 6f 20 64 |d are sa|ved to d|
|00003300| 69 73 6b 20 69 6e 73 74 | 65 61 64 2e 0d 00 00 00 |isk inst|ead.....|
|00003310| c3 54 68 69 73 20 77 69 | 6e 64 6f 77 20 69 73 20 |.This wi|ndow is |
|00003320| 6f 70 65 6e 65 64 20 61 | 66 74 65 72 20 73 65 6c |opened a|fter sel|
|00003330| 65 63 74 69 6e 67 20 74 | 68 65 20 22 4c 6f 61 64 |ecting t|he "Load|
|00003340| 20 73 65 71 75 65 6e 63 | 65 20 66 69 6c 65 c9 22 | sequenc|e file."|
|00003350| 20 6d 65 6e 75 20 69 74 | 65 6d 2e 0d 0d 49 74 20 | menu it|em...It |
|00003360| 63 61 6e 20 62 65 20 6d | 6f 76 65 64 20 62 75 74 |can be m|oved but|
|00003370| 20 6e 6f 74 20 73 69 7a | 65 64 2e 20 49 74 20 73 | not siz|ed. It s|
|00003380| 69 6d 70 6c 79 20 64 69 | 73 70 6c 61 79 73 20 74 |imply di|splays t|
|00003390| 68 65 20 73 65 71 75 65 | 6e 63 65 20 66 69 6c 65 |he seque|nce file|
|000033a0| 20 6e 61 6d 65 20 28 61 | 73 20 74 68 65 20 77 69 | name (a|s the wi|
|000033b0| 6e 64 6f 77 20 74 69 74 | 6c 65 29 20 61 6e 64 20 |ndow tit|le) and |
|000033c0| 74 68 65 20 73 65 71 75 | 65 6e 63 65 20 66 6f 72 |the sequ|ence for|
|000033d0| 6d 61 74 2e 00 00 08 44 | 54 68 65 20 66 6f 6c 6c |mat....D|The foll|
|000033e0| 6f 77 69 6e 67 20 69 73 | 20 65 78 74 72 61 63 74 |owing is| extract|
|000033f0| 65 64 20 66 72 6f 6d 20 | 74 68 65 20 50 72 6f 73 |ed from |the Pros|
|00003400| 69 74 65 20 55 73 65 72 | 20 4d 61 6e 75 61 6c 20 |ite User| Manual |
|00003410| 52 65 6c 2e 20 35 3a 0d | 0d 7b 71 75 6f 74 65 20 |Rel. 5:.|.{quote |
|00003420| 73 74 61 72 74 7d 0d 2d | 20 20 54 68 65 20 73 74 |start}.-|  The st|
|00003430| 61 6e 64 61 72 64 20 49 | 55 50 41 43 20 6f 6e 65 |andard I|UPAC one|
|00003440| 2d 6c 65 74 74 65 72 20 | 63 6f 64 65 73 20 66 6f |-letter |codes fo|
|00003450| 72 20 74 68 65 0d 20 20 | 20 20 61 6d 69 6e 6f 20 |r the.  |  amino |
|00003460| 61 63 69 64 73 20 61 72 | 65 20 75 73 65 64 2e 0d |acids ar|e used..|
|00003470| 0d 2d 20 20 54 68 65 20 | 73 79 6d 62 6f 6c 20 27 |.-  The |symbol '|
|00003480| 78 27 20 69 73 20 75 73 | 65 64 20 66 6f 72 20 61 |x' is us|ed for a|
|00003490| 20 70 6f 73 69 74 69 6f | 6e 20 77 68 65 72 65 20 | positio|n where |
|000034a0| 61 6e 79 0d 20 20 20 20 | 61 6d 69 6e 6f 20 61 63 |any.    |amino ac|
|000034b0| 69 64 20 69 73 20 61 63 | 63 65 70 74 65 64 2e 0d |id is ac|cepted..|
|000034c0| 0d 2d 20 20 41 6d 62 69 | 67 75 69 74 69 65 73 20 |.-  Ambi|guities |
|000034d0| 61 72 65 20 20 69 6e 64 | 69 63 61 74 65 64 20 62 |are  ind|icated b|
|000034e0| 79 20 20 6c 69 73 74 69 | 6e 67 20 74 68 65 0d 20 |y  listi|ng the. |
|000034f0| 20 20 20 61 63 63 65 70 | 74 61 62 6c 65 20 61 6d |   accep|table am|
|00003500| 69 6e 6f 20 61 63 69 64 | 73 20 66 6f 72 20 61 20 |ino acid|s for a |
|00003510| 67 69 76 65 6e 20 70 6f | 73 69 74 69 6f 6e 2c 0d |given po|sition,.|
|00003520| 20 20 20 20 62 65 74 77 | 65 65 6e 20 73 71 75 61 |    betw|een squa|
|00003530| 72 65 20 20 70 61 72 65 | 6e 74 68 65 73 65 73 20 |re  pare|ntheses |
|00003540| 27 5b 20 20 5d 27 2e 20 | 46 6f 72 20 65 78 61 6d |'[  ]'. |For exam|
|00003550| 70 6c 65 3a 0d 20 20 20 | 20 5b 41 4c 54 5d 20 73 |ple:.   | [ALT] s|
|00003560| 74 61 6e 64 73 20 66 6f | 72 20 41 6c 61 20 6f 72 |tands fo|r Ala or|
|00003570| 20 4c 65 75 20 6f 72 20 | 54 68 72 2e 0d 0d 2d 20 | Leu or |Thr...- |
|00003580| 20 41 6d 62 69 67 75 69 | 74 69 65 73 20 61 72 65 | Ambigui|ties are|
|00003590| 20 20 61 6c 73 6f 20 69 | 6e 64 69 63 61 74 65 64 |  also i|ndicated|
|000035a0| 20 20 62 79 20 6c 69 73 | 74 69 6e 67 0d 20 20 20 |  by lis|ting.   |
|000035b0| 20 62 65 74 77 65 65 6e | 20 61 20 20 70 61 69 72 | between| a  pair|
|000035c0| 20 20 6f 66 20 20 63 75 | 72 6c 79 20 62 72 61 63 |  of  cu|rly brac|
|000035d0| 6b 65 74 73 20 27 7b 20 | 20 7d 27 20 74 68 65 0d |kets '{ | }' the.|
|000035e0| 20 20 20 20 61 6d 69 6e | 6f 20 61 63 69 64 73 20 |    amin|o acids |
|000035f0| 20 74 68 61 74 20 61 72 | 65 20 20 6e 6f 74 20 20 | that ar|e  not  |
|00003600| 61 63 63 65 70 74 65 64 | 20 20 61 74 20 20 61 20 |accepted|  at  a |
|00003610| 0d 20 20 20 20 67 69 76 | 65 6e 20 70 6f 73 69 74 |.    giv|en posit|
|00003620| 69 6f 6e 2e 20 46 6f 72 | 20 20 65 78 61 6d 70 6c |ion. For|  exampl|
|00003630| 65 3a 20 7b 41 4d 7d 20 | 20 73 74 61 6e 64 73 20 |e: {AM} | stands |
|00003640| 66 6f 72 0d 20 20 20 20 | 61 6e 79 20 61 6d 69 6e |for.    |any amin|
|00003650| 6f 20 61 63 69 64 20 65 | 78 63 65 70 74 20 41 6c |o acid e|xcept Al|
|00003660| 61 20 61 6e 64 20 4d 65 | 74 2e 0d 0d 2d 20 20 45 |a and Me|t...-  E|
|00003670| 61 63 68 20 65 6c 65 6d | 65 6e 74 20 69 6e 20 61 |ach elem|ent in a|
|00003680| 20 70 61 74 74 65 72 6e | 20 69 73 20 73 65 70 61 | pattern| is sepa|
|00003690| 72 61 74 65 64 20 66 72 | 6f 6d 0d 20 20 20 20 69 |rated fr|om.    i|
|000036a0| 74 73 20 6e 65 69 67 68 | 62 6f 72 20 62 79 20 61 |ts neigh|bor by a|
|000036b0| 20 27 2d 27 2e 0d 0d 2d | 20 20 52 65 70 65 74 69 | '-'...-|  Repeti|
|000036c0| 74 69 6f 6e 20 6f 66 20 | 20 61 6e 20 65 6c 65 6d |tion of | an elem|
|000036d0| 65 6e 74 20 20 6f 66 20 | 74 68 65 20 70 61 74 74 |ent  of |the patt|
|000036e0| 65 72 6e 20 63 61 6e 0d | 20 20 20 20 62 65 20 69 |ern can.|    be i|
|000036f0| 6e 64 69 63 61 74 65 64 | 20 62 79 20 66 6f 6c 6c |ndicated| by foll|
|00003700| 6f 77 69 6e 67 20 74 68 | 61 74 20 65 6c 65 6d 65 |owing th|at eleme|
|00003710| 6e 74 20 20 77 69 74 68 | 20 61 0d 20 20 20 20 6e |nt  with| a.    n|
|00003720| 75 6d 65 72 69 63 61 6c | 20 76 61 6c 75 65 20 20 |umerical| value  |
|00003730| 6f 72 20 20 61 20 20 6e | 75 6d 65 72 69 63 61 6c |or  a  n|umerical|
|00003740| 20 20 72 61 6e 67 65 0d | 20 20 20 20 62 65 74 77 |  range.|    betw|
|00003750| 65 65 6e 20 70 61 72 65 | 6e 74 68 65 73 69 73 2e |een pare|nthesis.|
|00003760| 0d 20 20 20 20 45 78 61 | 6d 70 6c 65 73 3a 20 20 |.    Exa|mples:  |
|00003770| 20 78 28 33 29 20 20 63 | 6f 72 72 65 73 70 6f 6e | x(3)  c|orrespon|
|00003780| 64 73 20 20 20 74 6f 20 | 20 78 2d 78 2d 78 20 20 |ds   to | x-x-x  |
|00003790| 61 6e 64 0d 20 20 20 20 | 5b 46 59 5d 28 31 2c 32 |and.    |[FY](1,2|
|000037a0| 29 20 63 6f 72 72 65 73 | 70 6f 6e 64 73 20 74 6f |) corres|ponds to|
|000037b0| 20 5b 46 59 5d 20 6f 72 | 20 5b 46 59 5d 2d 5b 46 | [FY] or| [FY]-[F|
|000037c0| 59 5d 2e 0d 0d 2d 20 20 | 57 68 65 6e 20 61 20 20 |Y]...-  |When a  |
|000037d0| 70 61 74 74 65 72 6e 20 | 69 73 20 20 72 65 73 74 |pattern |is  rest|
|000037e0| 72 69 63 74 65 64 20 74 | 6f 20 20 65 69 74 68 65 |ricted t|o  eithe|
|000037f0| 72 20 74 68 65 20 20 4e | 2d 0d 20 20 20 20 6f 72 |r the  N|-.    or|
|00003800| 20 20 43 2d 74 65 72 6d | 69 6e 61 6c 20 20 6f 66 |  C-term|inal  of|
|00003810| 20 20 61 20 73 65 71 75 | 65 6e 63 65 2c 20 74 68 |  a sequ|ence, th|
|00003820| 61 74 20 20 70 61 74 74 | 65 72 6e 0d 20 20 20 20 |at  patt|ern.    |
|00003830| 65 69 74 68 65 72 20 20 | 73 74 61 72 74 73 20 77 |either  |starts w|
|00003840| 69 74 68 20 61 20 27 3c | 27 20 73 79 6d 62 6f 6c |ith a '<|' symbol|
|00003850| 20 6f 72 20 65 6e 64 73 | 20 77 69 74 68 20 61 0d | or ends| with a.|
|00003860| 20 20 20 20 27 3e 27 20 | 73 79 6d 62 6f 6c 2e 0d |    '>' |symbol..|
|00003870| 0d 2d 20 20 41 20 70 65 | 72 69 6f 64 20 65 6e 64 |.-  A pe|riod end|
|00003880| 73 20 74 68 65 20 70 61 | 74 74 65 72 6e 2e 0d 0d |s the pa|ttern...|
|00003890| 45 78 61 6d 70 6c 65 73 | 3a 0d 0d 50 41 20 20 20 |Examples|:..PA   |
|000038a0| 5b 41 43 5d 2d 78 2d 56 | 2d 78 28 34 29 2d 7b 45 |[AC]-x-V|-x(4)-{E|
|000038b0| 44 7d 2e 0d 0d 54 68 69 | 73 20 70 61 74 74 65 72 |D}...Thi|s patter|
|000038c0| 6e 20 20 63 61 6e 20 62 | 65 20 20 74 72 61 6e 73 |n  can b|e  trans|
|000038d0| 6c 61 74 65 64 20 61 73 | 3a 0d 5b 41 6c 61 20 6f |lated as|:.[Ala o|
|000038e0| 72 20 43 79 73 5d 2d 61 | 6e 79 2d 56 61 6c 2d 61 |r Cys]-a|ny-Val-a|
|000038f0| 6e 79 2d 61 6e 79 2d 61 | 6e 79 2d 61 6e 79 2d 0d |ny-any-a|ny-any-.|
|00003900| 7b 61 6e 79 20 62 75 74 | 20 47 6c 75 20 6f 72 20 |{any but| Glu or |
|00003910| 41 73 70 7d 0d 0d 00 50 | 41 20 20 20 3c 41 2d 78 |Asp}...P|A   <A-x|
|00003920| 2d 5b 53 54 5d 28 32 29 | 2d 78 28 30 2c 31 29 2d |-[ST](2)|-x(0,1)-|
|00003930| 56 2e 0d 0d 54 68 69 73 | 20 70 61 74 74 65 72 6e |V...This| pattern|
|00003940| 2c 20 20 77 68 69 63 68 | 20 6d 75 73 74 20 20 62 |,  which| must  b|
|00003950| 65 20 69 6e 20 74 68 65 | 20 4e 2d 74 65 72 6d 69 |e in the| N-termi|
|00003960| 6e 61 6c 0d 6f 66 20 74 | 68 65 20 73 65 71 75 65 |nal.of t|he seque|
|00003970| 6e 63 65 20 28 60 3c 27 | 29 2c 20 63 61 6e 20 62 |nce (`<'|), can b|
|00003980| 65 20 74 72 61 6e 73 6c | 61 74 65 64 20 61 73 3a |e transl|ated as:|
|00003990| 0d 41 6c 61 2d 61 6e 79 | 2d 5b 53 65 72 20 6f 72 |.Ala-any|-[Ser or|
|000039a0| 20 54 68 72 5d 2d 5b 53 | 65 72 20 6f 72 20 54 68 | Thr]-[S|er or Th|
|000039b0| 72 5d 2d 28 61 6e 79 20 | 6f 72 20 6e 6f 6e 65 29 |r]-(any |or none)|
|000039c0| 2d 56 61 6c 0d 7b 71 75 | 6f 74 65 20 65 6e 64 7d |-Val.{qu|ote end}|
|000039d0| 0d 0d 54 68 65 20 69 6e | 64 65 78 20 67 65 6e 65 |..The in|dex gene|
|000039e0| 72 61 74 69 6e 67 20 73 | 6f 66 74 77 61 72 65 20 |rating s|oftware |
|000039f0| 69 6e 20 74 68 65 20 4d | 61 63 50 61 74 74 65 72 |in the M|acPatter|
|00003a00| 6e 0d 70 61 63 6b 61 67 | 65 20 63 68 65 63 6b 73 |n.packag|e checks|
|00003a10| 20 74 68 65 20 69 6e 70 | 75 74 20 70 61 74 74 65 | the inp|ut patte|
|00003a20| 72 6e 20 64 61 74 61 62 | 61 73 65 20 66 6f 72 0d |rn datab|ase for.|
|00003a30| 61 6e 79 20 73 79 6e 74 | 61 78 20 65 72 72 6f 72 |any synt|ax error|
|00003a40| 73 2e 0d 0d 4e 6f 74 65 | 3a 20 69 66 20 79 6f 75 |s...Note|: if you|
|00003a50| 20 65 6e 74 65 72 20 61 | 20 70 61 74 74 65 72 6e | enter a| pattern|
|00003a60| 20 62 79 20 6b 65 79 62 | 6f 61 72 64 2c 20 74 68 | by keyb|oard, th|
|00003a70| 65 0d 66 6f 6c 6c 6f 77 | 69 6e 67 20 72 75 6c 65 |e.follow|ing rule|
|00003a80| 73 20 61 70 70 6c 79 20 | 69 6e 20 61 64 64 69 74 |s apply |in addit|
|00003a90| 69 6f 6e 20 74 6f 20 74 | 68 65 20 6f 6e 65 73 0d |ion to t|he ones.|
|00003aa0| 61 62 6f 76 65 3a 0d 0d | 2d 20 59 6f 75 20 6d 61 |above:..|- You ma|
|00003ab0| 79 20 6f 6d 69 74 20 74 | 68 65 20 74 72 61 69 6c |y omit t|he trail|
|00003ac0| 69 6e 67 20 70 65 72 69 | 6f 64 2e 0d 0d 2d 20 59 |ing peri|od...- Y|
|00003ad0| 6f 75 20 6d 61 79 20 6f | 6d 69 74 20 74 68 65 20 |ou may o|mit the |
|00003ae0| 64 61 73 68 65 73 2e 0d | 0d 2d 20 43 68 61 72 61 |dashes..|.- Chara|
|00003af0| 63 74 65 72 73 20 63 61 | 6e 20 62 65 20 75 70 70 |cters ca|n be upp|
|00003b00| 65 72 20 6f 72 20 6c 6f | 77 65 72 20 63 61 73 65 |er or lo|wer case|
|00003b10| 2e 0d 0d 2d 20 54 68 65 | 20 6d 61 78 69 6d 75 6d |...- The| maximum|
|00003b20| 20 70 61 74 74 65 72 6e | 20 73 69 7a 65 20 69 73 | pattern| size is|
|00003b30| 20 35 30 20 70 6f 73 69 | 74 69 6f 6e 73 2e 0d 20 | 50 posi|tions.. |
|00003b40| 20 20 41 20 70 6f 73 69 | 74 69 6f 6e 20 69 73 20 |  A posi|tion is |
|00003b50| 64 65 66 69 6e 65 64 20 | 62 79 20 73 75 72 72 6f |defined |by surro|
|00003b60| 75 6e 64 69 6e 67 20 64 | 61 73 68 65 73 2c 20 0d |unding d|ashes, .|
|00003b70| 20 20 20 6d 61 79 20 74 | 68 65 79 20 62 65 20 75 |   may t|hey be u|
|00003b80| 73 65 64 20 6f 72 20 6e | 6f 74 2e 20 54 68 65 72 |sed or n|ot. Ther|
|00003b90| 65 66 6f 72 65 2c 20 61 | 20 70 61 74 74 65 72 6e |efore, a| pattern|
|00003ba0| 0d 20 20 20 6c 69 6b 65 | 0d 20 20 20 4d 28 31 2c |.   like|.   M(1,|
|00003bb0| 33 30 29 2d 78 2d 4b 28 | 33 38 2c 33 39 29 20 5b |30)-x-K(|38,39) [|
|00003bc0| 6f 72 0d 20 20 20 4d 28 | 31 2c 33 30 29 58 4b 28 |or.   M(|1,30)XK(|
|00003bd0| 33 38 2c 33 39 29 5d 0d | 20 20 20 69 73 20 70 65 |38,39)].|   is pe|
|00003be0| 72 66 65 63 74 6c 79 20 | 66 69 6e 65 2c 20 73 69 |rfectly |fine, si|
|00003bf0| 6e 63 65 20 69 74 20 63 | 6f 6e 73 69 73 74 73 20 |nce it c|onsists |
|00003c00| 6f 66 20 6f 6e 6c 79 0d | 20 20 20 74 68 72 65 65 |of only.|   three|
|00003c10| 20 70 6f 73 69 74 69 6f | 6e 73 2e 00 00 00 01 d7 | positio|ns......|
|00003c20| 54 68 65 20 64 69 73 74 | 72 69 62 75 74 69 6f 6e |The dist|ribution|
|00003c30| 20 70 61 63 6b 61 67 65 | 20 63 6f 6e 73 69 73 74 | package| consist|
|00003c40| 73 20 6f 66 20 74 68 65 | 20 66 6f 6c 6c 6f 77 69 |s of the| followi|
|00003c50| 6e 67 20 66 6f 75 72 20 | 66 69 6c 65 73 3a 0d 0d |ng four |files:..|
|00003c60| 4d 61 63 50 61 74 74 65 | 72 6e 20 2d 20 54 68 65 |MacPatte|rn - The|
|00003c70| 20 4d 61 63 50 61 74 74 | 65 72 6e 20 61 70 70 6c | MacPatt|ern appl|
|00003c80| 69 63 61 74 69 6f 6e 0d | 48 65 6c 70 20 44 61 74 |ication.|Help Dat|
|00003c90| 61 20 20 2d 20 54 68 65 | 20 6f 6e 2d 6c 69 6e 65 |a  - The| on-line|
|00003ca0| 20 68 65 6c 70 20 66 69 | 6c 65 0d 4d 61 63 50 61 | help fi|le.MacPa|
|00003cb0| 74 74 65 72 6e 20 4d 61 | 6e 75 61 6c 20 2d 20 54 |ttern Ma|nual - T|
|00003cc0| 68 69 73 20 64 6f 63 75 | 6d 65 6e 74 61 74 69 6f |his docu|mentatio|
|00003cd0| 6e 0d 52 65 61 64 4d 65 | 20 46 69 72 73 74 20 2d |n.ReadMe| First -|
|00003ce0| 20 49 6e 66 6f 72 6d 61 | 74 69 6f 6e 20 61 62 6f | Informa|tion abo|
|00003cf0| 75 74 20 6c 61 74 65 73 | 74 20 76 65 72 73 69 6f |ut lates|t versio|
|00003d00| 6e 0d 0d 0d 00 41 64 64 | 69 74 69 6f 6e 61 6c 6c |n....Add|itionall|
|00003d10| 79 2c 20 74 68 65 20 66 | 6f 6c 6c 6f 77 69 6e 67 |y, the f|ollowing|
|00003d20| 20 66 69 6c 65 73 20 74 | 79 70 65 73 20 77 69 6c | files t|ypes wil|
|00003d30| 6c 20 62 65 20 63 72 65 | 61 74 65 64 20 77 68 65 |l be cre|ated whe|
|00003d40| 6e 20 4d 61 63 50 61 74 | 74 65 72 6e 20 69 73 20 |n MacPat|tern is |
|00003d50| 75 73 65 64 2e 20 48 6f | 77 65 76 65 72 2c 20 74 |used. Ho|wever, t|
|00003d60| 68 65 79 20 61 72 65 20 | 6e 6f 74 20 70 61 72 74 |hey are |not part|
|00003d70| 20 69 66 20 74 68 69 73 | 20 70 61 63 6b 61 67 65 | if this| package|
|00003d80| 20 61 6e 64 20 64 6f 6e | 27 74 20 6e 65 65 64 20 | and don|'t need |
|00003d90| 74 6f 20 62 65 20 70 61 | 73 73 65 64 20 6f 6e 20 |to be pa|ssed on |
|00003da0| 62 65 63 61 75 73 65 20 | 74 68 65 79 20 63 61 6e |because |they can|
|00003db0| 20 62 65 20 65 61 73 69 | 6c 79 20 72 65 63 72 65 | be easi|ly recre|
|00003dc0| 61 74 65 64 3a 0d 0d 44 | 61 74 61 62 61 73 65 20 |ated:..D|atabase |
|00003dd0| 69 6e 64 65 78 20 66 69 | 6c 65 73 0d 4d 61 63 50 |index fi|les.MacP|
|00003de0| 61 74 74 65 72 6e 20 50 | 72 65 66 65 72 65 6e 63 |attern P|referenc|
|00003df0| 65 73 20 66 69 6c 65 00 | 00 00 bd 54 68 65 20 66 |es file.|...The f|
|00003e00| 6f 6c 6c 6f 77 69 6e 67 | 20 6d 65 6e 75 73 20 61 |ollowing| menus a|
|00003e10| 72 65 20 61 76 61 69 6c | 61 62 6c 65 20 66 72 6f |re avail|able fro|
|00003e20| 6d 20 4d 61 63 50 61 74 | 74 65 72 6e 3a 0d 0d 2d |m MacPat|tern:..-|
|00003e30| 20 41 70 70 6c 65 20 4d | 65 6e 75 0d 2d 20 46 69 | Apple M|enu.- Fi|
|00003e40| 6c 65 20 4d 65 6e 75 0d | 2d 20 45 64 69 74 20 4d |le Menu.|- Edit M|
|00003e50| 65 6e 75 0d 2d 20 50 72 | 6f 73 69 74 65 20 4d 65 |enu.- Pr|osite Me|
|00003e60| 6e 75 0d 2d 20 42 6c 6f | 63 6b 73 20 4d 65 6e 75 |nu.- Blo|cks Menu|
|00003e70| 0d 2d 20 53 74 61 74 73 | 20 4d 65 6e 75 0d 2d 20 |.- Stats| Menu.- |
|00003e80| 4f 70 74 69 6f 6e 73 20 | 4d 65 6e 75 0d 2d 20 57 |Options |Menu.- W|
|00003e90| 69 6e 64 6f 77 73 20 4d | 65 6e 75 0d 2d 20 48 65 |indows M|enu.- He|
|00003ea0| 6c 70 20 4d 65 6e 75 20 | 28 75 6e 64 65 72 20 53 |lp Menu |(under S|
|00003eb0| 79 73 74 65 6d 20 37 29 | 00 00 00 8f 54 68 65 20 |ystem 7)|....The |
|00003ec0| 66 6f 6c 6c 6f 77 69 6e | 67 20 77 69 6e 64 6f 77 |followin|g window|
|00003ed0| 20 74 79 70 65 73 20 61 | 72 65 20 61 76 61 69 6c | types a|re avail|
|00003ee0| 61 62 6c 65 20 66 72 6f | 6d 20 4d 61 63 50 61 74 |able fro|m MacPat|
|00003ef0| 74 65 72 6e 3a 0d 0d 2d | 20 44 61 74 61 62 61 73 |tern:..-| Databas|
|00003f00| 65 20 42 72 6f 77 73 65 | 72 20 57 69 6e 64 6f 77 |e Browse|r Window|
|00003f10| 0d 2d 20 44 61 74 61 62 | 61 73 65 20 45 6e 74 72 |.- Datab|ase Entr|
|00003f20| 79 20 57 69 6e 64 6f 77 | 0d 2d 20 52 65 73 75 6c |y Window|.- Resul|
|00003f30| 74 73 20 57 69 6e 64 6f | 77 0d 2d 20 53 65 71 75 |ts Windo|w.- Sequ|
|00003f40| 65 6e 63 65 20 57 69 6e | 64 6f 77 00 00 12 9c 4d |ence Win|dow....M|
|00003f50| 61 63 50 61 74 74 65 72 | 6e 20 63 61 6e 20 62 65 |acPatter|n can be|
|00003f60| 20 75 73 65 64 20 77 69 | 74 68 20 41 2e 20 42 61 | used wi|th A. Ba|
|00003f70| 69 72 6f 63 68 d5 73 20 | 50 52 4f 53 49 54 45 20 |iroch.s |PROSITE |
|00003f80| 70 61 74 74 65 72 6e 20 | 64 61 74 61 62 61 73 65 |pattern |database|
|00003f90| 2c 20 53 2e 20 48 65 6e | 69 6b 6f 66 66 d5 73 20 |, S. Hen|ikoff.s |
|00003fa0| 42 4c 4f 43 4b 53 20 64 | 61 74 61 62 61 73 65 2c |BLOCKS d|atabase,|
|00003fb0| 20 6f 72 20 77 69 74 68 | 20 79 6f 75 72 20 6f 77 | or with| your ow|
|00003fc0| 6e 2c 20 70 72 69 76 61 | 74 65 20 70 61 74 74 65 |n, priva|te patte|
|00003fd0| 72 6e 20 6f 72 20 62 6c | 6f 63 6b 20 64 61 74 61 |rn or bl|ock data|
|00003fe0| 62 61 73 65 2e 20 54 6f | 20 75 73 65 20 4d 61 63 |base. To| use Mac|
|00003ff0| 50 61 74 74 65 72 6e 20 | 77 69 74 68 20 50 52 4f |Pattern |with PRO|
|00004000| 53 49 54 45 20 61 6e 64 | 2f 6f 72 20 42 4c 4f 43 |SITE and|/or BLOC|
|00004010| 4b 53 20 66 6f 6c 6c 6f | 77 20 74 68 65 20 69 6e |KS follo|w the in|
|00004020| 73 74 72 75 63 74 69 6f | 6e 73 20 67 69 76 65 6e |structio|ns given|
|00004030| 20 69 6e 20 74 68 69 73 | 20 63 68 61 70 74 65 72 | in this| chapter|
|00004040| 2e 20 53 65 65 20 d4 50 | 61 74 74 65 72 6e 20 44 |. See .P|attern D|
|00004050| 61 74 61 62 61 73 65 73 | d5 20 61 6e 64 20 d4 42 |atabases|. and .B|
|00004060| 6c 6f 63 6b 20 44 61 74 | 61 62 61 73 65 73 d5 20 |lock Dat|abases. |
|00004070| 66 6f 72 20 6d 6f 72 65 | 20 69 6e 66 6f 72 6d 61 |for more| informa|
|00004080| 74 69 6f 6e 20 69 66 20 | 79 6f 75 20 77 61 6e 74 |tion if |you want|
|00004090| 20 74 6f 20 75 73 65 20 | 61 20 70 72 69 76 61 74 | to use |a privat|
|000040a0| 65 20 64 61 74 61 62 61 | 73 65 20 69 6e 73 74 65 |e databa|se inste|
|000040b0| 61 64 2e 0d 0d 53 74 65 | 70 20 31 3a 0d 4d 61 6b |ad...Ste|p 1:.Mak|
|000040c0| 65 20 73 75 72 65 20 74 | 68 61 74 20 79 6f 75 20 |e sure t|hat you |
|000040d0| 68 61 76 65 20 67 6f 74 | 20 61 6c 6c 20 70 61 72 |have got| all par|
|000040e0| 74 73 20 6f 66 20 74 68 | 65 20 4d 61 63 50 61 74 |ts of th|e MacPat|
|000040f0| 74 65 72 6e 20 70 61 63 | 6b 61 67 65 20 28 73 65 |tern pac|kage (se|
|00004100| 65 20 41 70 70 65 6e 64 | 69 78 20 41 29 2e 0d 0d |e Append|ix A)...|
|00004110| 53 74 65 70 20 32 3a 0d | 54 6f 20 75 73 65 20 50 |Step 2:.|To use P|
|00004120| 52 4f 53 49 54 45 20 67 | 65 74 20 61 20 63 6f 70 |ROSITE g|et a cop|
|00004130| 79 20 6f 66 20 74 68 65 | 20 50 52 4f 53 49 54 45 |y of the| PROSITE|
|00004140| 20 64 61 74 61 62 61 73 | 65 2c 20 65 2e 67 2e 2c | databas|e, e.g.,|
|00004150| 20 66 72 6f 6d 20 74 68 | 65 20 45 4d 42 4c 20 46 | from th|e EMBL F|
|00004160| 69 6c 65 20 53 65 72 76 | 65 72 20 6f 72 20 74 68 |ile Serv|er or th|
|00004170| 65 20 45 4d 42 4c 20 43 | 44 2d 52 4f 4d 2e 20 59 |e EMBL C|D-ROM. Y|
|00004180| 6f 75 20 77 69 6c 6c 20 | 6e 65 65 64 20 61 74 20 |ou will |need at |
|00004190| 6c 65 61 73 74 20 74 68 | 65 20 70 72 6f 73 69 74 |least th|e prosit|
|000041a0| 65 2e 64 61 74 20 66 69 | 6c 65 2c 20 62 75 74 20 |e.dat fi|le, but |
|000041b0| 79 6f 75 20 73 68 6f 75 | 6c 64 20 75 73 65 20 74 |you shou|ld use t|
|000041c0| 68 65 20 70 72 6f 73 69 | 74 65 2e 64 6f 63 20 66 |he prosi|te.doc f|
|000041d0| 69 6c 65 2c 20 74 6f 6f | 2e 20 54 68 65 20 73 70 |ile, too|. The sp|
|000041e0| 65 65 64 20 6f 66 20 61 | 6e 61 6c 79 73 69 73 20 |eed of a|nalysis |
|000041f0| 69 73 20 6e 6f 74 20 61 | 66 66 65 63 74 65 64 2e |is not a|ffected.|
|00004200| 20 54 68 65 20 42 4c 4f | 43 4b 53 20 64 61 74 61 | The BLO|CKS data|
|00004210| 62 61 73 65 20 63 61 6e | 20 62 65 20 6f 62 74 61 |base can| be obta|
|00004220| 69 6e 65 64 20 66 72 6f | 6d 20 74 68 65 20 73 61 |ined fro|m the sa|
|00004230| 6d 65 20 73 6f 75 72 63 | 65 73 2e 20 59 6f 75 20 |me sourc|es. You |
|00004240| 77 69 6c 6c 20 6f 6e 6c | 79 20 6e 65 65 64 20 74 |will onl|y need t|
|00004250| 68 65 20 62 6c 6f 63 6b | 73 2e 64 61 74 20 66 69 |he block|s.dat fi|
|00004260| 6c 65 2e 20 0d 0d 53 74 | 65 70 20 33 3a 0d 43 68 |le. ..St|ep 3:.Ch|
|00004270| 65 63 6b 20 77 68 65 74 | 68 65 72 20 79 6f 75 72 |eck whet|her your|
|00004280| 20 63 6f 70 69 65 73 20 | 6f 66 20 50 52 4f 53 49 | copies |of PROSI|
|00004290| 54 45 20 61 6e 64 20 42 | 4c 4f 43 4b 53 20 61 72 |TE and B|LOCKS ar|
|000042a0| 65 20 61 6c 72 65 61 64 | 79 20 69 6e 20 4d 61 63 |e alread|y in Mac|
|000042b0| 69 6e 74 6f 73 68 20 66 | 6f 72 6d 61 74 2e 20 49 |intosh f|ormat. I|
|000042c0| 66 20 6e 6f 74 2c 20 74 | 68 65 79 20 68 61 76 65 |f not, t|hey have|
|000042d0| 20 74 6f 20 62 65 20 63 | 6f 6e 76 65 72 74 65 64 | to be c|onverted|
|000042e0| 20 74 6f 20 4d 61 63 69 | 6e 74 6f 73 68 20 66 6f | to Maci|ntosh fo|
|000042f0| 72 6d 61 74 20 66 69 72 | 73 74 2e 20 49 66 20 79 |rmat fir|st. If y|
|00004300| 6f 75 20 72 65 63 65 69 | 76 65 64 20 74 68 65 20 |ou recei|ved the |
|00004310| 64 61 74 61 62 61 73 65 | 20 66 69 6c 65 73 20 62 |database| files b|
|00004320| 79 20 65 6c 65 63 74 72 | 6f 6e 69 63 20 6d 61 69 |y electr|onic mai|
|00004330| 6c 2c 20 66 74 70 20 6f | 72 20 6f 74 68 65 72 20 |l, ftp o|r other |
|00004340| 6d 65 61 6e 73 20 6f 66 | 20 6e 65 74 77 6f 72 6b |means of| network|
|00004350| 20 66 69 6c 65 20 74 72 | 61 6e 73 66 65 72 2c 20 | file tr|ansfer, |
|00004360| 63 6f 6e 76 65 72 73 69 | 6f 6e 20 77 6f 75 6c 64 |conversi|on would|
|00004370| 20 6e 6f 72 6d 61 6c 6c | 79 20 6e 6f 74 20 62 65 | normall|y not be|
|00004380| 20 6e 65 63 65 73 73 61 | 72 79 2e 20 49 66 20 79 | necessa|ry. If y|
|00004390| 6f 75 20 63 6f 70 69 65 | 64 20 74 68 65 20 66 69 |ou copie|d the fi|
|000043a0| 6c 65 73 20 66 72 6f 6d | 20 74 68 65 20 45 4d 42 |les from| the EMB|
|000043b0| 4c 20 43 44 2d 52 4f 4d | 2c 20 68 6f 77 65 76 65 |L CD-ROM|, howeve|
|000043c0| 72 2c 20 63 6f 6e 76 65 | 72 73 69 6f 6e 20 69 73 |r, conve|rsion is|
|000043d0| 20 72 65 71 75 69 72 65 | 64 2e 0d 0d 4f 6e 20 74 | require|d...On t|
|000043e0| 68 65 20 4d 61 63 69 6e | 74 6f 73 68 2c 20 74 68 |he Macin|tosh, th|
|000043f0| 65 20 65 6e 64 20 6f 66 | 20 61 20 6c 69 6e 65 20 |e end of| a line |
|00004400| 6f 66 20 74 65 78 74 20 | 69 73 20 6d 61 72 6b 65 |of text |is marke|
|00004410| 64 20 62 79 20 61 20 73 | 6f 2d 63 61 6c 6c 65 64 |d by a s|o-called|
|00004420| 20 63 61 72 72 69 61 67 | 65 20 72 65 74 75 72 6e | carriag|e return|
|00004430| 20 63 68 61 72 61 63 74 | 65 72 2c 20 77 68 65 72 | charact|er, wher|
|00004440| 65 61 73 20 4d 53 2d 44 | 4f 53 20 73 79 73 74 65 |eas MS-D|OS syste|
|00004450| 6d 73 20 61 6e 64 20 74 | 68 65 20 45 4d 42 4c 20 |ms and t|he EMBL |
|00004460| 43 44 2d 52 4f 4d 20 75 | 73 65 20 74 68 65 20 63 |CD-ROM u|se the c|
|00004470| 6f 6d 62 69 6e 61 74 69 | 6f 6e 20 6f 66 20 61 20 |ombinati|on of a |
|00004480| 63 61 72 72 69 61 67 65 | 20 72 65 74 75 72 6e 20 |carriage| return |
|00004490| 61 6e 64 20 61 20 6c 69 | 6e 65 66 65 65 64 20 63 |and a li|nefeed c|
|000044a0| 68 61 72 61 63 74 65 72 | 20 74 6f 20 64 65 6c 69 |haracter| to deli|
|000044b0| 6d 69 74 20 6c 69 6e 65 | 73 2e 20 4f 70 65 6e 20 |mit line|s. Open |
|000044c0| 79 6f 75 72 20 64 61 74 | 61 62 61 73 65 20 66 69 |your dat|abase fi|
|000044d0| 6c 65 73 20 77 69 74 68 | 20 61 20 77 6f 72 64 20 |les with| a word |
|000044e0| 70 72 6f 63 65 73 73 6f | 72 20 73 75 63 68 20 61 |processo|r such a|
|000044f0| 73 20 4d 53 20 57 6f 72 | 64 20 6f 72 20 4d 61 63 |s MS Wor|d or Mac|
|00004500| 57 72 69 74 65 2e 20 49 | 66 20 79 6f 75 20 73 65 |Write. I|f you se|
|00004510| 65 20 61 20 73 6d 61 6c | 6c 20 73 71 75 61 72 65 |e a smal|l square|
|00004520| 20 62 6f 78 20 28 77 68 | 69 63 68 20 69 73 20 68 | box (wh|ich is h|
|00004530| 6f 77 20 6c 69 6e 65 66 | 65 65 64 73 20 61 70 70 |ow linef|eeds app|
|00004540| 65 61 72 20 6f 6e 20 74 | 68 65 20 73 63 72 65 65 |ear on t|he scree|
|00004550| 6e 29 20 61 74 20 74 68 | 65 20 62 65 67 69 6e 6e |n) at th|e beginn|
|00004560| 69 6e 67 20 6f 66 20 65 | 76 65 72 79 20 6c 69 6e |ing of e|very lin|
|00004570| 65 20 65 78 63 65 70 74 | 20 66 6f 72 20 74 68 65 |e except| for the|
|00004580| 20 66 69 72 73 74 20 6f | 6e 65 2c 20 74 68 65 6e | first o|ne, then|
|00004590| 20 79 6f 75 72 20 66 69 | 6c 65 73 20 6e 65 65 64 | your fi|les need|
|000045a0| 20 63 6f 6e 76 65 72 73 | 69 6f 6e 2c 20 69 2e 65 | convers|ion, i.e|
|000045b0| 2e 20 79 6f 75 20 68 61 | 76 65 20 74 6f 20 73 74 |. you ha|ve to st|
|000045c0| 72 69 70 20 6f 66 66 20 | 74 68 65 20 61 64 64 69 |rip off |the addi|
|000045d0| 74 69 6f 6e 61 6c 20 6c | 69 6e 65 66 65 65 64 20 |tional l|inefeed |
|000045e0| 63 68 61 72 61 63 74 65 | 72 73 20 66 69 72 73 74 |characte|rs first|
|000045f0| 2e 20 49 66 20 74 68 65 | 20 66 69 6c 65 73 20 6c |. If the| files l|
|00004600| 6f 6f 6b 20 6e 6f 72 6d | 61 6c 20 74 6f 20 79 6f |ook norm|al to yo|
|00004610| 75 2c 20 74 68 65 6e 20 | 79 6f 75 20 63 61 6e 20 |u, then |you can |
|00004620| 73 6b 69 70 20 64 69 72 | 65 63 74 6c 79 20 74 6f |skip dir|ectly to|
|00004630| 20 73 74 65 70 20 34 20 | 6e 6f 77 2e 0d 0d 00 46 | step 4 |now....F|
|00004640| 69 6c 65 20 63 6f 6e 76 | 65 72 73 69 6f 6e 73 20 |ile conv|ersions |
|00004650| 63 61 6e 20 62 65 20 70 | 65 72 66 6f 72 6d 65 64 |can be p|erformed|
|00004660| 20 69 6e 20 73 65 76 65 | 72 61 6c 20 77 61 79 73 | in seve|ral ways|
|00004670| 3a 0d 0d 2d 20 4e 75 6d | 65 72 6f 75 73 20 70 75 |:..- Num|erous pu|
|00004680| 62 6c 69 63 20 64 6f 6d | 61 69 6e 20 75 74 69 6c |blic dom|ain util|
|00004690| 69 74 69 65 73 20 61 72 | 65 20 61 76 61 69 6c 61 |ities ar|e availa|
|000046a0| 62 6c 65 0d 20 20 20 66 | 6f 72 20 74 68 69 73 20 |ble.   f|or this |
|000046b0| 70 75 72 70 6f 73 65 2c | 20 65 2e 67 2e 2c 20 4d |purpose,| e.g., M|
|000046c0| 61 63 53 69 6e 6b 2c 20 | 44 65 73 6b 5a 61 70 2c |acSink, |DeskZap,|
|000046d0| 20 65 74 63 2e 0d 20 20 | 20 53 65 65 20 74 68 65 | etc..  | See the|
|000046e0| 20 64 6f 63 75 6d 65 6e | 74 61 74 69 6f 6e 20 61 | documen|tation a|
|000046f0| 63 63 6f 6d 70 61 6e 79 | 69 6e 67 20 74 68 65 73 |ccompany|ing thes|
|00004700| 65 0d 20 20 20 74 6f 6f | 6c 73 20 66 6f 72 20 64 |e.   too|ls for d|
|00004710| 65 74 61 69 6c 73 2e 0d | 0d 2d 20 59 6f 75 20 6d |etails..|.- You m|
|00004720| 61 79 20 75 73 65 20 74 | 68 65 20 41 70 70 6c 65 |ay use t|he Apple|
|00004730| 20 46 69 6c 65 20 45 78 | 63 68 61 6e 67 65 20 28 | File Ex|change (|
|00004740| 41 46 45 29 0d 20 20 20 | 70 72 6f 67 72 61 6d 20 |AFE).   |program |
|00004750| 70 72 6f 76 69 64 65 64 | 20 6f 6e 20 6f 6e 65 20 |provided| on one |
|00004760| 6f 66 20 79 6f 75 72 20 | 73 79 73 74 65 6d 20 64 |of your |system d|
|00004770| 69 73 6b 73 2e 0d 20 20 | 20 50 6c 65 61 73 65 20 |isks..  | Please |
|00004780| 72 65 66 65 72 20 74 6f | 20 74 68 65 20 61 63 63 |refer to| the acc|
|00004790| 6f 6d 70 61 6e 79 69 6e | 67 20 64 6f 63 75 6d 65 |ompanyin|g docume|
|000047a0| 6e 74 61 74 69 6f 6e 20 | 74 6f 0d 20 20 20 6c 65 |ntation |to.   le|
|000047b0| 61 72 6e 20 68 6f 77 20 | 74 6f 20 63 6f 6e 76 65 |arn how |to conve|
|000047c0| 72 74 20 4d 53 2d 44 4f | 53 20 74 65 78 74 20 66 |rt MS-DO|S text f|
|000047d0| 69 6c 65 73 20 74 6f 0d | 20 20 20 4d 61 63 69 6e |iles to.|   Macin|
|000047e0| 74 6f 73 68 20 74 65 78 | 74 20 66 69 6c 65 73 2e |tosh tex|t files.|
|000047f0| 0d 0d 2d 20 59 6f 75 20 | 6d 61 79 20 61 6c 73 6f |..- You |may also|
|00004800| 20 75 73 65 20 74 68 65 | 20 46 69 6e 64 2f 52 65 | use the| Find/Re|
|00004810| 70 6c 61 63 65 20 66 75 | 6e 63 74 69 6f 6e 20 6f |place fu|nction o|
|00004820| 66 0d 20 20 20 79 6f 75 | 72 20 77 6f 72 64 20 70 |f.   you|r word p|
|00004830| 72 6f 63 65 73 73 6f 72 | 20 69 66 20 69 74 20 61 |rocessor| if it a|
|00004840| 6c 6c 6f 77 73 20 79 6f | 75 20 74 6f 20 73 65 61 |llows yo|u to sea|
|00004850| 72 63 68 0d 20 20 20 66 | 6f 72 20 6e 6f 6e 2d 70 |rch.   f|or non-p|
|00004860| 72 69 6e 74 69 6e 67 20 | 63 68 61 72 61 63 74 65 |rinting |characte|
|00004870| 72 73 2e 20 53 65 61 72 | 63 68 20 66 6f 72 20 61 |rs. Sear|ch for a|
|00004880| 6c 6c 0d 20 20 20 6f 63 | 63 75 72 72 65 6e 63 65 |ll.   oc|currence|
|00004890| 73 20 6f 66 20 74 68 65 | 20 6c 69 6e 65 66 65 65 |s of the| linefee|
|000048a0| 64 20 63 68 61 72 61 63 | 74 65 72 20 61 6e 64 20 |d charac|ter and |
|000048b0| 0d 20 20 20 73 69 6d 70 | 6c 79 20 65 6e 74 65 72 |.   simp|ly enter|
|000048c0| 20 61 6e 20 65 6d 70 74 | 79 20 72 65 70 6c 61 63 | an empt|y replac|
|000048d0| 65 6d 65 6e 74 20 73 74 | 72 69 6e 67 2e 0d 20 20 |ement st|ring..  |
|000048e0| 20 4d 61 6b 65 20 73 75 | 72 65 20 79 6f 75 20 73 | Make su|re you s|
|000048f0| 61 76 65 20 79 6f 75 72 | 20 6d 6f 64 69 66 69 65 |ave your| modifie|
|00004900| 64 20 64 6f 63 75 6d 65 | 6e 74 20 61 73 20 0d 20 |d docume|nt as . |
|00004910| 20 20 70 75 72 65 20 74 | 65 78 74 20 28 63 68 6f |  pure t|ext (cho|
|00004920| 6f 73 65 20 74 68 65 20 | d2 74 65 78 74 20 6f 6e |ose the |.text on|
|00004930| 6c 79 d3 20 6f 72 20 d2 | 41 53 43 49 49 0d 20 20 |ly. or .|ASCII.  |
|00004940| 20 6f 6e 6c 79 d3 20 6f | 70 74 69 6f 6e 20 6f 66 | only. o|ption of|
|00004950| 20 79 6f 75 72 20 77 6f | 72 64 20 70 72 6f 63 65 | your wo|rd proce|
|00004960| 73 73 6f 72 29 21 21 21 | 0d 0d 53 74 65 70 20 34 |ssor)!!!|..Step 4|
|00004970| 3a 0d 4e 6f 77 20 79 6f | 75 20 61 72 65 20 72 65 |:.Now yo|u are re|
|00004980| 61 64 79 20 74 6f 20 63 | 72 65 61 74 65 20 74 68 |ady to c|reate th|
|00004990| 65 20 64 61 74 61 62 61 | 73 65 20 69 6e 64 65 78 |e databa|se index|
|000049a0| 20 66 69 6c 65 28 73 29 | 2e 20 53 74 61 72 74 20 | file(s)|. Start |
|000049b0| 4d 61 63 50 61 74 74 65 | 72 6e 20 62 79 20 64 6f |MacPatte|rn by do|
|000049c0| 75 62 6c 65 2d 63 6c 69 | 63 6b 69 6e 67 20 69 74 |uble-cli|cking it|
|000049d0| 73 20 46 69 6e 64 65 72 | 20 69 63 6f 6e 20 61 6e |s Finder| icon an|
|000049e0| 64 20 73 65 6c 65 63 74 | 20 74 68 65 20 6d 65 6e |d select| the men|
|000049f0| 75 20 63 6f 6d 6d 61 6e | 64 20 4e 65 77 20 49 6e |u comman|d New In|
|00004a00| 64 65 78 20 66 72 6f 6d | 20 74 68 65 20 46 69 6c |dex from| the Fil|
|00004a10| 65 20 6d 65 6e 75 2e 20 | 41 20 73 75 62 6d 65 6e |e menu. |A submen|
|00004a20| 75 20 67 69 76 65 73 20 | 79 6f 75 20 74 68 65 20 |u gives |you the |
|00004a30| 63 68 6f 69 63 65 20 6f | 66 20 63 72 65 61 74 69 |choice o|f creati|
|00004a40| 6e 67 20 61 6e 20 69 6e | 64 65 78 20 66 6f 72 20 |ng an in|dex for |
|00004a50| 50 52 4f 53 49 54 45 20 | 6f 72 20 42 4c 4f 43 4b |PROSITE |or BLOCK|
|00004a60| 53 2e 20 41 20 73 74 61 | 6e 64 61 72 64 20 64 69 |S. A sta|ndard di|
|00004a70| 72 65 63 74 6f 72 79 20 | 64 69 61 6c 6f 67 20 62 |rectory |dialog b|
|00004a80| 6f 78 20 20 61 70 70 65 | 61 72 73 20 61 6e 64 20 |ox  appe|ars and |
|00004a90| 79 6f 75 20 61 72 65 20 | 70 72 6f 6d 70 74 65 64 |you are |prompted|
|00004aa0| 20 66 6f 72 20 74 68 65 | 20 6e 61 6d 65 20 6f 66 | for the| name of|
|00004ab0| 20 74 68 65 20 64 61 74 | 61 62 61 73 65 20 66 69 | the dat|abase fi|
|00004ac0| 6c 65 2e 20 4c 6f 63 61 | 74 65 20 70 72 6f 73 69 |le. Loca|te prosi|
|00004ad0| 74 65 2e 64 61 74 20 6f | 72 20 62 6c 6f 63 6b 73 |te.dat o|r blocks|
|00004ae0| 2e 64 61 74 2c 20 64 65 | 70 65 6e 64 69 6e 67 20 |.dat, de|pending |
|00004af0| 6f 6e 20 77 68 69 63 68 | 20 69 6e 64 65 78 20 79 |on which| index y|
|00004b00| 6f 75 20 77 61 6e 74 20 | 74 6f 20 63 72 65 61 74 |ou want |to creat|
|00004b10| 65 2c 20 61 6e 64 20 6f | 70 65 6e 20 69 74 2e 20 |e, and o|pen it. |
|00004b20| 44 6f 20 6e 6f 74 20 73 | 65 6c 65 63 74 20 70 72 |Do not s|elect pr|
|00004b30| 6f 73 69 74 65 2e 64 6f | 63 21 20 49 66 20 79 6f |osite.do|c! If yo|
|00004b40| 75 20 77 61 6e 74 20 74 | 6f 20 69 6e 64 65 78 20 |u want t|o index |
|00004b50| 50 52 4f 53 49 54 45 20 | 61 6e 64 2c 20 66 6f 72 |PROSITE |and, for|
|00004b60| 20 73 6f 6d 65 20 72 65 | 61 73 6f 6e 2c 20 4d 61 | some re|ason, Ma|
|00004b70| 63 50 61 74 74 65 72 6e | 20 63 61 6e 6e 6f 74 20 |cPattern| cannot |
|00004b80| 66 69 6e 64 20 70 72 6f | 73 69 74 65 2e 64 6f 63 |find pro|site.doc|
|00004b90| 20 69 6e 20 74 68 65 20 | 73 61 6d 65 20 64 69 72 | in the |same dir|
|00004ba0| 65 63 74 6f 72 79 20 61 | 73 20 70 72 6f 73 69 74 |ectory a|s prosit|
|00004bb0| 65 2e 64 61 74 2c 20 79 | 6f 75 20 77 69 6c 6c 20 |e.dat, y|ou will |
|00004bc0| 62 65 20 6e 6f 74 69 66 | 69 65 64 20 61 6e 64 20 |be notif|ied and |
|00004bd0| 4d 61 63 50 61 74 74 65 | 72 6e 20 77 69 6c 6c 20 |MacPatte|rn will |
|00004be0| 6f 6e 6c 79 20 75 73 65 | 20 74 68 65 20 70 72 6f |only use| the pro|
|00004bf0| 73 69 74 65 2e 64 61 74 | 20 66 69 6c 65 20 66 6f |site.dat| file fo|
|00004c00| 72 20 62 75 69 6c 64 69 | 6e 67 20 74 68 65 20 69 |r buildi|ng the i|
|00004c10| 6e 64 65 78 2e 20 4d 61 | 63 50 61 74 74 65 72 6e |ndex. Ma|cPattern|
|00004c20| 20 74 68 65 6e 20 63 72 | 65 61 74 65 73 20 61 6e | then cr|eates an|
|00004c30| 20 69 6e 64 65 78 20 66 | 69 6c 65 20 63 61 6c 6c | index f|ile call|
|00004c40| 65 64 20 70 72 6f 73 69 | 74 65 2e 69 6e 78 20 6f |ed prosi|te.inx o|
|00004c50| 72 20 62 6c 6f 63 6b 73 | 2e 69 6e 78 20 69 6e 20 |r blocks|.inx in |
|00004c60| 74 68 65 20 73 61 6d 65 | 20 64 69 72 65 63 74 6f |the same| directo|
|00004c70| 72 79 20 69 6e 20 77 68 | 69 63 68 20 74 68 65 20 |ry in wh|ich the |
|00004c80| 64 61 74 61 62 61 73 65 | 20 66 69 6c 65 73 20 61 |database| files a|
|00004c90| 72 65 20 6c 6f 63 61 74 | 65 64 2e 20 49 74 20 77 |re locat|ed. It w|
|00004ca0| 69 6c 6c 20 61 6c 73 6f | 20 61 73 6b 20 79 6f 75 |ill also| ask you|
|00004cb0| 20 77 68 65 74 68 65 72 | 20 79 6f 75 20 77 61 6e | whether| you wan|
|00004cc0| 74 20 74 6f 20 73 6f 72 | 74 20 74 68 65 20 64 61 |t to sor|t the da|
|00004cd0| 74 61 62 61 73 65 20 65 | 6e 74 72 69 65 73 20 61 |tabase e|ntries a|
|00004ce0| 6c 70 68 61 62 65 74 69 | 63 61 6c 6c 79 20 62 79 |lphabeti|cally by|
|00004cf0| 20 65 6e 74 72 79 20 6e | 61 6d 65 20 6f 72 20 6c | entry n|ame or l|
|00004d00| 65 61 76 65 20 74 68 65 | 6d 20 69 6e 20 74 68 65 |eave the|m in the|
|00004d10| 69 72 20 6f 72 69 67 69 | 6e 61 6c 20 6f 72 64 65 |ir origi|nal orde|
|00004d20| 72 2e 0d 0d 41 74 74 65 | 6e 74 69 6f 6e 3a 0d 49 |r...Atte|ntion:.I|
|00004d30| 66 20 79 6f 75 20 63 72 | 65 61 74 65 20 61 6e 20 |f you cr|eate an |
|00004d40| 69 6e 64 65 78 20 66 69 | 6c 65 20 66 6f 72 20 50 |index fi|le for P|
|00004d50| 52 4f 53 49 54 45 20 4d | 61 63 50 61 74 74 65 72 |ROSITE M|acPatter|
|00004d60| 6e 20 77 69 6c 6c 20 63 | 6f 6d 70 6c 61 69 6e 20 |n will c|omplain |
|00004d70| 61 62 6f 75 74 20 74 68 | 65 20 65 6e 74 72 69 65 |about th|e entrie|
|00004d80| 73 20 50 53 30 30 32 36 | 37 20 28 54 41 43 48 59 |s PS0026|7 (TACHY|
|00004d90| 4b 49 4e 49 4e 29 20 61 | 6e 64 20 50 53 30 30 35 |KININ) a|nd PS005|
|00004da0| 33 39 20 28 50 59 52 4f | 4b 49 4e 49 4e 29 2e 0d |39 (PYRO|KININ)..|
|00004db0| 0d 54 68 65 20 72 65 61 | 73 6f 6e 20 66 6f 72 20 |.The rea|son for |
|00004dc0| 74 68 69 73 20 62 65 68 | 61 76 69 6f 75 72 20 69 |this beh|aviour i|
|00004dd0| 73 20 74 68 65 20 70 61 | 74 74 65 72 6e 20 64 65 |s the pa|ttern de|
|00004de0| 66 69 6e 69 74 69 6f 6e | 20 6f 66 20 74 61 63 68 |finition| of tach|
|00004df0| 79 6b 69 6e 69 6e 73 3a | 0d 20 20 20 20 20 20 20 |ykinins:|.       |
|00004e00| 20 20 20 20 20 20 20 20 | 20 20 20 20 46 2d 5b 49 |        |    F-[I|
|00004e10| 56 46 59 5d 2d 47 2d 5b | 4c 4d 5d 2d 4d 2d 5b 47 |VFY]-G-[|LM]-M-[G|
|00004e20| 3e 5d 0d 09 09 09 09 09 | 09 09 09 09 20 20 20 20 |>]......|....    |
|00004e30| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 |        |        |
|00004e40| 20 20 20 20 20 20 20 20 | 5e 5e 5e 5e 0d 61 6e 64 |        |^^^^.and|
|00004e50| 20 70 79 72 6f 6b 69 6e | 69 6e 73 3a 0d 20 20 20 | pyrokin|ins:.   |
|00004e60| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 |        |        |
|00004e70| 46 2d 5b 53 54 56 5d 2d | 50 2d 52 2d 4c 2d 5b 47 |F-[STV]-|P-R-L-[G|
|00004e80| 3e 5d 0d 09 09 09 09 09 | 20 20 20 20 20 20 20 20 |>]......|        |
|00004e90| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 |        |        |
|00004ea0| 20 20 20 20 5e 5e 5e 5e | 0d 0d 54 68 65 20 63 61 |    ^^^^|..The ca|
|00004eb0| 72 62 6f 78 79 2d 74 65 | 72 6d 69 6e 75 73 20 73 |rboxy-te|rminus s|
|00004ec0| 79 6d 62 6f 6c 20 27 3e | 27 20 69 73 20 74 72 65 |ymbol '>|' is tre|
|00004ed0| 61 74 65 64 20 6c 69 6b | 65 20 61 6e 20 61 6d 69 |ated lik|e an ami|
|00004ee0| 6e 6f 20 61 63 69 64 2c | 20 61 6e 64 20 49 20 66 |no acid,| and I f|
|00004ef0| 65 65 6c 20 74 68 61 74 | 20 74 68 69 73 20 69 73 |eel that| this is|
|00004f00| 20 6e 6f 74 20 63 6f 76 | 65 72 65 64 20 62 79 20 | not cov|ered by |
|00004f10| 74 68 65 20 64 65 66 69 | 6e 69 74 69 6f 6e 20 6f |the defi|nition o|
|00004f20| 66 20 74 68 65 20 50 52 | 4f 53 49 54 45 20 70 61 |f the PR|OSITE pa|
|00004f30| 74 74 65 72 6e 20 73 79 | 6e 74 61 78 20 61 73 20 |ttern sy|ntax as |
|00004f40| 67 69 76 65 6e 20 69 6e | 20 74 68 65 20 50 52 4f |given in| the PRO|
|00004f50| 53 49 54 45 20 6d 61 6e | 75 61 6c 2e 0d 0d 50 65 |SITE man|ual...Pe|
|00004f60| 72 73 6f 6e 61 6c 6c 79 | 2c 20 49 20 75 73 65 20 |rsonally|, I use |
|00004f70| 61 20 74 65 78 74 20 65 | 64 69 74 6f 72 20 74 6f |a text e|ditor to|
|00004f80| 20 72 65 70 6c 61 63 65 | 20 74 68 65 20 50 41 20 | replace| the PA |
|00004f90| 6c 69 6e 65 73 20 69 6e | 20 74 68 65 73 65 20 65 |lines in| these e|
|00004fa0| 6e 74 72 69 65 73 20 62 | 79 0d 50 41 20 20 20 46 |ntries b|y.PA   F|
|00004fb0| 2d 5b 49 56 46 59 5d 2d | 47 2d 5b 4c 4d 5d 2d 4d |-[IVFY]-|G-[LM]-M|
|00004fc0| 2d 47 28 30 2c 31 29 20 | 61 6e 64 0d 50 41 20 20 |-G(0,1) |and.PA  |
|00004fd0| 20 46 2d 5b 53 54 56 5d | 2d 50 2d 52 2d 4c 2d 47 | F-[STV]|-P-R-L-G|
|00004fe0| 28 30 2c 31 29 2c 20 72 | 65 73 70 65 63 74 69 76 |(0,1), r|espectiv|
|00004ff0| 65 6c 79 2e 0d 0d 4e 6f | 74 65 2c 20 74 68 61 74 |ely...No|te, that|
|00005000| 20 74 68 69 73 20 70 61 | 74 74 65 72 6e 20 64 65 | this pa|ttern de|
|00005010| 66 69 6e 69 74 69 6f 6e | 20 69 73 20 6e 6f 74 20 |finition| is not |
|00005020| 65 78 61 63 74 6c 79 20 | 65 71 75 69 76 61 6c 65 |exactly |equivale|
|00005030| 6e 74 20 74 6f 20 74 68 | 65 20 6f 72 69 67 69 6e |nt to th|e origin|
|00005040| 61 6c 20 6f 6e 65 2e 20 | 57 69 74 68 20 74 68 65 |al one. |With the|
|00005050| 20 6e 65 77 20 50 41 20 | 6c 69 6e 65 20 79 6f 75 | new PA |line you|
|00005060| 20 6d 61 79 20 64 65 74 | 65 63 74 20 61 20 70 61 | may det|ect a pa|
|00005070| 74 74 65 72 6e 20 6c 69 | 6b 65 20 46 49 47 4d 4d |ttern li|ke FIGMM|
|00005080| 20 69 6e 20 74 68 65 20 | 6d 69 64 64 6c 65 20 6f | in the |middle o|
|00005090| 66 20 61 20 70 72 6f 74 | 65 69 6e 2c 20 77 68 65 |f a prot|ein, whe|
|000050a0| 72 65 61 73 20 69 74 20 | 69 73 20 6f 6e 6c 79 20 |reas it |is only |
|000050b0| 61 6c 6c 6f 77 65 64 20 | 61 74 20 74 68 65 20 63 |allowed |at the c|
|000050c0| 61 72 62 6f 78 79 2d 74 | 65 72 6d 69 6e 75 73 2e |arboxy-t|erminus.|
|000050d0| 0d 0d 53 74 65 70 20 35 | 3a 0d 44 6f 6e 65 21 20 |..Step 5|:.Done! |
|000050e0| 59 6f 75 20 63 61 6e 20 | 6e 6f 77 20 75 73 65 20 |You can |now use |
|000050f0| 4d 61 63 50 61 74 74 65 | 72 6e 20 77 69 74 68 20 |MacPatte|rn with |
|00005100| 74 68 65 20 50 52 4f 53 | 49 54 45 20 6f 72 20 42 |the PROS|ITE or B|
|00005110| 4c 4f 43 4b 53 20 64 61 | 74 61 62 61 73 65 2e 0d |LOCKS da|tabase..|
|00005120| 0d 0d 55 73 69 6e 67 20 | 4d 61 63 50 61 74 74 65 |..Using |MacPatte|
|00005130| 72 6e 20 69 73 20 61 6c | 6d 6f 73 74 20 73 65 6c |rn is al|most sel|
|00005140| 66 2d 65 78 70 6c 61 6e | 61 74 6f 72 79 2e 20 20 |f-explan|atory.  |
|00005150| 46 6f 72 20 64 65 74 61 | 69 6c 65 64 20 69 6e 66 |For deta|iled inf|
|00005160| 6f 72 6d 61 74 69 6f 6e | 20 79 6f 75 20 6d 61 79 |ormation| you may|
|00005170| 20 77 61 6e 74 20 74 6f | 20 72 65 66 65 72 20 74 | want to| refer t|
|00005180| 6f 20 74 68 69 73 20 6d | 61 6e 75 61 6c 2c 20 74 |o this m|anual, t|
|00005190| 68 65 20 6f 6e 2d 6c 69 | 6e 65 20 68 65 6c 70 20 |he on-li|ne help |
|000051a0| 66 75 6e 63 74 69 6f 6e | 20 6f 72 20 42 61 6c 6c |function| or Ball|
|000051b0| 6f 6f 6e 20 48 65 6c 70 | 20 28 69 66 20 79 6f 75 |oon Help| (if you|
|000051c0| 20 61 72 65 20 72 75 6e | 6e 69 6e 67 20 53 79 73 | are run|ning Sys|
|000051d0| 74 65 6d 20 37 29 2e 41 | 70 70 6c 65 20 61 6e 64 |tem 7).A|pple and|
|000051e0| 20 48 65 6c 70 20 4d 65 | 6e 75 0d 00 00 0f 9b a5 | Help Me|nu......|
|000051f0| 20 46 69 6e 64 20 28 6f | 72 20 11 2d 46 29 0d 0d | Find (o|r .-F)..|
|00005200| 54 68 69 73 20 6d 65 6e | 75 20 63 6f 6d 6d 61 6e |This men|u comman|
|00005210| 64 20 69 73 20 6f 6e 6c | 79 20 61 76 61 69 6c 61 |d is onl|y availa|
|00005220| 62 6c 65 20 69 66 0d 20 | 20 20 2d 20 20 61 20 73 |ble if. |  -  a s|
|00005230| 65 71 75 65 6e 63 65 20 | 66 69 6c 65 20 69 73 20 |equence |file is |
|00005240| 6f 70 65 6e 2c 0d 20 20 | 20 2d 20 20 61 20 70 61 |open,.  | -  a pa|
|00005250| 74 74 65 72 6e 20 64 61 | 74 61 62 61 73 65 20 66 |ttern da|tabase f|
|00005260| 69 6c 65 20 69 73 20 6f | 70 65 6e 20 61 6e 64 20 |ile is o|pen and |
|00005270| 74 68 65 0d 20 20 20 20 | 20 20 20 63 6f 72 72 65 |the.    |   corre|
|00005280| 73 70 6f 6e 64 69 6e 67 | 20 77 69 6e 64 6f 77 20 |sponding| window |
|00005290| 69 73 20 74 68 65 20 61 | 63 74 69 76 65 20 77 69 |is the a|ctive wi|
|000052a0| 6e 64 6f 77 2c 0d 20 20 | 20 20 20 20 20 61 6e 64 |ndow,.  |     and|
|000052b0| 0d 20 20 20 2d 20 20 61 | 74 20 6c 65 61 73 74 20 |.   -  a|t least |
|000052c0| 6f 6e 65 20 70 61 74 74 | 65 72 6e 20 69 73 20 73 |one patt|ern is s|
|000052d0| 65 6c 65 63 74 65 64 20 | 66 72 6f 6d 20 74 68 65 |elected |from the|
|000052e0| 20 6c 69 73 74 20 6f 66 | 0d 20 20 20 20 20 20 20 | list of|.       |
|000052f0| 70 61 74 74 65 72 6e 73 | 2e 0d 0d 57 68 65 6e 20 |patterns|...When |
|00005300| 74 68 69 73 20 63 6f 6d | 6d 61 6e 64 20 69 73 20 |this com|mand is |
|00005310| 63 68 6f 73 65 6e 20 4d | 61 63 50 61 74 74 65 72 |chosen M|acPatter|
|00005320| 6e 20 62 65 67 69 6e 73 | 20 74 6f 20 73 63 61 6e |n begins| to scan|
|00005330| 20 74 68 65 20 73 65 71 | 75 65 6e 63 65 20 66 69 | the seq|uence fi|
|00005340| 6c 65 20 66 6f 72 20 61 | 6e 79 20 6f 63 63 75 72 |le for a|ny occur|
|00005350| 72 65 6e 63 65 73 20 6f | 66 20 74 68 65 20 73 65 |rences o|f the se|
|00005360| 6c 65 63 74 65 64 20 70 | 61 74 74 65 72 6e 73 2e |lected p|atterns.|
|00005370| 20 41 20 72 6f 74 61 74 | 69 6e 67 20 77 61 69 74 | A rotat|ing wait|
|00005380| 20 63 75 72 73 6f 72 20 | 61 6e 64 20 61 20 73 6d | cursor |and a sm|
|00005390| 61 6c 6c 20 77 69 6e 64 | 6f 77 20 77 69 74 68 20 |all wind|ow with |
|000053a0| 61 20 70 72 6f 67 72 65 | 73 73 20 62 61 72 20 69 |a progre|ss bar i|
|000053b0| 6e 64 69 63 61 74 65 20 | 74 68 65 20 70 72 6f 67 |ndicate |the prog|
|000053c0| 72 65 73 73 20 6f 66 20 | 74 68 65 20 73 65 61 72 |ress of |the sear|
|000053d0| 63 68 2e 20 0d 0d 54 68 | 69 73 20 77 69 6e 64 6f |ch. ..Th|is windo|
|000053e0| 77 20 69 73 20 61 20 6d | 6f 76 61 62 6c 65 20 6d |w is a m|ovable m|
|000053f0| 6f 64 61 6c 20 64 69 61 | 6c 6f 67 2e 20 54 68 61 |odal dia|log. Tha|
|00005400| 74 20 69 73 2c 20 79 6f | 75 20 63 61 6e 20 6d 6f |t is, yo|u can mo|
|00005410| 76 65 20 69 74 20 61 72 | 6f 75 6e 64 20 74 68 65 |ve it ar|ound the|
|00005420| 20 73 63 72 65 65 6e 2c | 20 62 75 74 20 79 6f 75 | screen,| but you|
|00005430| 20 63 61 6e 6e 6f 74 20 | 75 73 65 20 61 6e 79 20 | cannot |use any |
|00005440| 6f 74 68 65 72 20 6f 70 | 74 69 6f 6e 20 6f 66 20 |other op|tion of |
|00005450| 4d 61 63 50 61 74 74 65 | 72 6e 20 64 75 72 69 6e |MacPatte|rn durin|
|00005460| 67 20 61 20 73 65 61 72 | 63 68 2e 20 4d 6f 73 74 |g a sear|ch. Most|
|00005470| 20 69 6d 70 6f 72 74 61 | 6e 74 6c 79 2c 20 69 74 | importa|ntly, it|
|00005480| 20 61 6c 6c 6f 77 73 20 | 79 6f 75 20 74 6f 20 73 | allows |you to s|
|00005490| 77 69 74 63 68 20 74 6f | 20 61 6e 6f 74 68 65 72 |witch to| another|
|000054a0| 20 61 70 70 6c 69 63 61 | 74 69 6f 6e 20 62 79 20 | applica|tion by |
|000054b0| 63 6c 69 63 6b 69 6e 67 | 20 6f 6e 20 61 20 77 69 |clicking| on a wi|
|000054c0| 6e 64 6f 77 20 77 68 69 | 63 68 20 62 65 6c 6f 6e |ndow whi|ch belon|
|000054d0| 67 73 20 74 6f 20 74 68 | 61 74 20 61 70 70 6c 69 |gs to th|at appli|
|000054e0| 63 61 74 69 6f 6e 2c 20 | 62 79 20 63 6c 69 63 6b |cation, |by click|
|000054f0| 69 6e 67 20 6f 6e 20 74 | 68 65 20 73 6d 61 6c 6c |ing on t|he small|
|00005500| 20 69 63 6f 6e 20 69 6e | 20 74 68 65 20 72 69 67 | icon in| the rig|
|00005510| 68 74 20 75 70 70 65 72 | 20 63 6f 72 6e 65 72 20 |ht upper| corner |
|00005520| 77 68 65 6e 20 79 6f 75 | 20 61 72 65 20 72 75 6e |when you| are run|
|00005530| 6e 69 6e 67 20 53 79 73 | 74 65 6d 20 36 20 61 6e |ning Sys|tem 6 an|
|00005540| 64 20 4d 75 6c 74 69 46 | 69 6e 64 65 72 20 6f 72 |d MultiF|inder or|
|00005550| 20 62 79 20 73 65 6c 65 | 63 74 69 6e 67 20 61 6e | by sele|cting an|
|00005560| 20 61 70 70 6c 69 63 61 | 74 69 6f 6e 20 66 72 6f | applica|tion fro|
|00005570| 6d 20 74 68 65 20 41 70 | 70 6c 69 63 61 74 69 6f |m the Ap|plicatio|
|00005580| 6e 20 6d 65 6e 75 20 69 | 6e 20 53 79 73 74 65 6d |n menu i|n System|
|00005590| 20 37 2e 20 49 66 20 79 | 6f 75 20 73 77 69 74 63 | 7. If y|ou switc|
|000055a0| 68 20 74 6f 20 61 6e 6f | 74 68 65 72 20 61 70 70 |h to ano|ther app|
|000055b0| 6c 69 63 61 74 69 6f 6e | 2c 20 4d 61 63 50 61 74 |lication|, MacPat|
|000055c0| 74 65 72 6e 20 77 69 6c | 6c 20 63 6f 6e 74 69 6e |tern wil|l contin|
|000055d0| 75 65 20 69 74 73 20 73 | 65 61 72 63 68 20 69 6e |ue its s|earch in|
|000055e0| 20 74 68 65 20 62 61 63 | 6b 67 72 6f 75 6e 64 2c | the bac|kground,|
|000055f0| 20 62 75 74 20 77 69 6c | 6c 20 67 69 76 65 20 70 | but wil|l give p|
|00005600| 6c 65 6e 74 79 20 6f 66 | 20 74 69 6d 65 20 74 6f |lenty of| time to|
|00005610| 20 74 68 65 20 20 61 63 | 74 69 76 65 20 61 70 70 | the  ac|tive app|
|00005620| 6c 69 63 61 74 69 6f 6e | 2e 20 57 68 65 6e 20 74 |lication|. When t|
|00005630| 68 65 20 73 65 61 72 63 | 68 20 69 73 20 66 69 6e |he searc|h is fin|
|00005640| 69 73 68 65 64 2c 20 4d | 61 63 50 61 74 74 65 72 |ished, M|acPatter|
|00005650| 6e 20 77 69 6c 6c 20 6e | 6f 74 69 66 79 20 79 6f |n will n|otify yo|
|00005660| 75 20 62 79 20 61 20 62 | 65 65 70 20 61 6e 64 20 |u by a b|eep and |
|00005670| 62 79 20 66 6c 61 73 68 | 69 6e 67 20 69 74 73 20 |by flash|ing its |
|00005680| 69 63 6f 6e 20 69 6e 20 | 74 68 65 20 6c 65 66 74 |icon in |the left|
|00005690| 20 6f 72 20 72 69 67 68 | 74 20 75 70 70 65 72 20 | or righ|t upper |
|000056a0| 63 6f 72 6e 65 72 20 28 | 64 65 70 65 6e 64 69 6e |corner (|dependin|
|000056b0| 67 20 6f 6e 20 79 6f 75 | 72 20 53 79 73 74 65 6d |g on you|r System|
|000056c0| 20 76 65 72 73 69 6f 6e | 29 2e 0d 0d 52 65 73 75 | version|)...Resu|
|000056d0| 6c 74 73 20 61 72 65 20 | 64 69 73 70 6c 61 79 65 |lts are |displaye|
|000056e0| 64 20 69 6e 20 61 20 72 | 65 73 75 6c 74 73 20 77 |d in a r|esults w|
|000056f0| 69 6e 64 6f 77 20 69 66 | 20 74 68 65 72 65 20 69 |indow if| there i|
|00005700| 73 20 6c 65 73 73 20 74 | 68 61 6e 20 33 32 20 6b |s less t|han 32 k|
|00005710| 69 6c 6f 62 79 74 65 73 | 20 6f 66 20 64 61 74 61 |ilobytes| of data|
|00005720| 2e 20 4f 74 68 65 72 77 | 69 73 65 2c 20 61 20 64 |. Otherw|ise, a d|
|00005730| 69 72 65 63 74 6f 72 79 | 20 64 69 61 6c 6f 67 20 |irectory| dialog |
|00005740| 62 6f 78 20 77 69 6c 6c | 20 70 6f 70 20 75 70 20 |box will| pop up |
|00005750| 61 6e 64 20 79 6f 75 20 | 77 69 6c 6c 20 62 65 20 |and you |will be |
|00005760| 70 72 6f 6d 70 74 65 64 | 20 66 6f 72 20 61 20 66 |prompted| for a f|
|00005770| 69 6c 65 6e 61 6d 65 20 | 74 6f 20 73 61 76 65 20 |ilename |to save |
|00005780| 74 68 65 20 72 65 73 75 | 6c 74 73 20 74 6f 20 64 |the resu|lts to d|
|00005790| 69 73 6b 2e 20 0d 0d 41 | 20 73 65 61 72 63 68 20 |isk. ..A| search |
|000057a0| 63 61 6e 20 62 65 20 69 | 6e 74 65 72 72 75 70 74 |can be i|nterrupt|
|000057b0| 65 64 20 61 74 20 61 6e | 79 20 74 69 6d 65 20 62 |ed at an|y time b|
|000057c0| 79 20 70 72 65 73 73 69 | 6e 67 20 11 2d 50 65 72 |y pressi|ng .-Per|
|000057d0| 69 6f 64 20 6f 72 20 45 | 73 63 61 70 65 2c 20 6f |iod or E|scape, o|
|000057e0| 72 20 62 79 20 63 6c 69 | 63 6b 69 6e 67 20 74 68 |r by cli|cking th|
|000057f0| 65 20 53 74 6f 70 20 62 | 75 74 74 6f 6e 2e 0d 0d |e Stop b|utton...|
|00005800| 00 a5 20 45 6e 74 65 72 | 20 50 61 74 74 65 72 6e |.. Enter| Pattern|
|00005810| c9 20 28 6f 72 20 11 2d | 45 29 0d 0d 43 68 6f 6f |. (or .-|E)..Choo|
|00005820| 73 65 20 74 68 69 73 20 | 6d 65 6e 75 20 63 6f 6d |se this |menu com|
|00005830| 6d 61 6e 64 20 74 6f 20 | 65 6e 74 65 72 20 61 20 |mand to |enter a |
|00005840| 70 61 74 74 65 72 6e 20 | 6d 61 6e 75 61 6c 6c 79 |pattern |manually|
|00005850| 20 69 6e 73 74 65 61 64 | 20 6f 66 20 73 65 6c 65 | instead| of sele|
|00005860| 63 74 69 6e 67 20 70 61 | 74 74 65 72 6e 73 20 66 |cting pa|tterns f|
|00005870| 72 6f 6d 20 61 20 64 61 | 74 61 62 61 73 65 2e 20 |rom a da|tabase. |
|00005880| 54 68 69 73 20 63 6f 6d | 6d 61 6e 64 20 69 73 20 |This com|mand is |
|00005890| 6f 6e 6c 79 20 61 76 61 | 69 6c 61 62 6c 65 20 69 |only ava|ilable i|
|000058a0| 66 20 61 20 73 65 71 75 | 65 6e 63 65 20 66 69 6c |f a sequ|ence fil|
|000058b0| 65 20 69 73 20 6f 70 65 | 6e 2e 0d 0d 59 6f 75 20 |e is ope|n...You |
|000058c0| 6d 61 79 20 65 6e 74 65 | 72 20 61 6e 79 20 76 61 |may ente|r any va|
|000058d0| 6c 69 64 20 70 61 74 74 | 65 72 6e 20 69 6e 20 74 |lid patt|ern in t|
|000058e0| 68 65 20 73 74 61 6e 64 | 61 72 64 20 50 52 4f 53 |he stand|ard PROS|
|000058f0| 49 54 45 20 73 79 6e 74 | 61 78 20 28 73 65 65 20 |ITE synt|ax (see |
|00005900| 41 70 70 65 6e 64 69 78 | 20 42 29 2e 20 4d 61 63 |Appendix| B). Mac|
|00005910| 50 61 74 74 65 72 6e 20 | 63 68 65 63 6b 73 20 74 |Pattern |checks t|
|00005920| 68 65 20 63 6f 72 72 65 | 63 74 6e 65 73 73 20 6f |he corre|ctness o|
|00005930| 66 20 74 68 65 20 70 61 | 74 74 65 72 6e 20 77 68 |f the pa|ttern wh|
|00005940| 65 6e 20 74 68 65 20 46 | 69 6e 64 20 62 75 74 74 |en the F|ind butt|
|00005950| 6f 6e 20 69 73 20 63 6c | 69 63 6b 65 64 20 61 6e |on is cl|icked an|
|00005960| 64 20 77 69 6c 6c 20 6e | 6f 74 69 66 79 20 79 6f |d will n|otify yo|
|00005970| 75 20 69 66 20 69 74 20 | 64 65 74 65 63 74 73 20 |u if it |detects |
|00005980| 73 79 6e 74 61 78 20 65 | 72 72 6f 72 73 2e 0d 0d |syntax e|rrors...|
|00005990| 54 68 65 20 46 69 6e 64 | 20 62 75 74 74 6f 6e 20 |The Find| button |
|000059a0| 73 74 61 72 74 73 20 74 | 68 65 20 73 65 61 72 63 |starts t|he searc|
|000059b0| 68 20 75 73 69 6e 67 20 | 74 68 65 20 63 75 72 72 |h using |the curr|
|000059c0| 65 6e 74 6c 79 20 6f 70 | 65 6e 20 73 65 71 75 65 |ently op|en seque|
|000059d0| 6e 63 65 20 66 69 6c 65 | 2c 20 77 68 69 6c 65 20 |nce file|, while |
|000059e0| 43 61 6e 63 65 6c 20 77 | 69 6c 6c 20 64 69 73 6d |Cancel w|ill dism|
|000059f0| 69 73 73 20 74 68 69 73 | 20 64 69 61 6c 6f 67 20 |iss this| dialog |
|00005a00| 77 69 74 68 6f 75 74 20 | 69 6e 69 74 69 61 74 69 |without |initiati|
|00005a10| 6e 67 20 61 20 73 65 61 | 72 63 68 2e 0d 0d 48 69 |ng a sea|rch...Hi|
|00005a20| 6e 74 3a 20 49 66 20 79 | 6f 75 20 77 61 6e 74 20 |nt: If y|ou want |
|00005a30| 74 6f 20 73 65 61 72 63 | 68 20 61 20 63 6f 6d 70 |to searc|h a comp|
|00005a40| 6c 65 74 65 20 70 72 6f | 74 65 69 6e 20 64 61 74 |lete pro|tein dat|
|00005a50| 61 62 61 73 65 20 66 6f | 72 20 6f 6e 65 20 67 69 |abase fo|r one gi|
|00005a60| 76 65 6e 20 50 52 4f 53 | 49 54 45 20 70 61 74 74 |ven PROS|ITE patt|
|00005a70| 65 72 6e 2c 20 79 6f 75 | 20 73 68 6f 75 6c 64 20 |ern, you| should |
|00005a80| 70 72 6f 63 65 65 64 20 | 61 73 20 66 6f 6c 6c 6f |proceed |as follo|
|00005a90| 77 73 3a 0d 0d 2d 20 44 | 6f 75 62 6c 65 2d 63 6c |ws:..- D|ouble-cl|
|00005aa0| 69 63 6b 20 6f 6e 20 74 | 68 65 20 70 61 74 74 65 |ick on t|he patte|
|00005ab0| 72 6e 20 6e 61 6d 65 20 | 69 6e 20 74 68 65 20 70 |rn name |in the p|
|00005ac0| 61 74 74 65 72 6e 0d 20 | 20 20 6c 69 73 74 20 74 |attern. |  list t|
|00005ad0| 6f 20 61 63 63 65 73 73 | 20 74 68 65 20 64 6f 63 |o access| the doc|
|00005ae0| 75 6d 65 6e 74 61 74 69 | 6f 6e 2e 0d 2d 20 53 65 |umentati|on..- Se|
|00005af0| 6c 65 63 74 20 74 68 65 | 20 70 61 74 74 65 72 6e |lect the| pattern|
|00005b00| 20 69 6e 20 74 68 65 20 | 50 41 20 6c 69 6e 65 20 | in the |PA line |
|00005b10| 6f 66 20 74 68 69 73 20 | 65 6e 74 72 79 0d 20 20 |of this |entry.  |
|00005b20| 20 77 69 74 68 20 74 68 | 65 20 6d 6f 75 73 65 2e | with th|e mouse.|
|00005b30| 0d 2d 20 55 73 65 20 74 | 68 65 20 43 6f 70 79 20 |.- Use t|he Copy |
|00005b40| 63 6f 6d 6d 61 6e 64 20 | 74 6f 20 63 6f 70 79 20 |command |to copy |
|00005b50| 69 74 20 74 6f 20 74 68 | 65 20 63 6c 69 70 62 6f |it to th|e clipbo|
|00005b60| 61 72 64 2e 0d 2d 20 53 | 65 6c 65 63 74 20 45 6e |ard..- S|elect En|
|00005b70| 74 65 72 20 50 61 74 74 | 65 72 6e 20 66 72 6f 6d |ter Patt|ern from|
|00005b80| 20 74 68 65 20 50 72 6f | 73 69 74 65 20 6d 65 6e | the Pro|site men|
|00005b90| 75 2e 0d 2d 20 55 73 65 | 20 50 61 73 74 65 20 74 |u..- Use| Paste t|
|00005ba0| 6f 20 69 6e 73 65 72 74 | 20 74 68 65 20 70 61 74 |o insert| the pat|
|00005bb0| 74 65 72 6e 20 69 6e 74 | 6f 20 74 68 65 20 65 64 |tern int|o the ed|
|00005bc0| 69 74 20 66 69 65 6c 64 | 2e 0d 2d 20 43 6c 69 63 |it field|..- Clic|
|00005bd0| 6b 20 4f 4b 2e 0d 0d 54 | 68 65 20 73 65 61 72 63 |k OK...T|he searc|
|00005be0| 68 20 77 69 6c 6c 20 62 | 65 20 6d 75 63 68 20 66 |h will b|e much f|
|00005bf0| 61 73 74 65 72 20 74 68 | 61 6e 20 61 20 73 65 61 |aster th|an a sea|
|00005c00| 72 63 68 20 69 6e 69 74 | 69 61 74 65 64 20 62 79 |rch init|iated by|
|00005c10| 20 73 65 6c 65 63 74 69 | 6e 67 20 6f 6e 6c 79 20 | selecti|ng only |
|00005c20| 6f 6e 65 20 65 6e 74 72 | 79 20 69 6e 20 74 68 65 |one entr|y in the|
|00005c30| 20 70 61 74 74 65 72 6e | 20 6c 69 73 74 2e 20 0d | pattern| list. .|
|00005c40| 0d a5 20 53 6f 72 74 20 | 52 65 73 75 6c 74 73 20 |.. Sort |Results |
|00005c50| 62 79 20 50 61 74 74 65 | 72 6e 20 61 6e 64 20 53 |by Patte|rn and S|
|00005c60| 6f 72 74 20 52 65 73 75 | 6c 74 73 20 62 79 20 4c |ort Resu|lts by L|
|00005c70| 6f 63 61 74 69 6f 6e 0d | 0d 54 68 65 73 65 20 6d |ocation.|.These m|
|00005c80| 65 6e 75 20 63 6f 6d 6d | 61 6e 64 73 20 61 72 65 |enu comm|ands are|
|00005c90| 20 75 73 65 64 20 74 6f | 20 73 65 6c 65 63 74 20 | used to| select |
|00005ca0| 74 68 65 20 66 6f 72 6d | 61 74 20 69 6e 20 77 68 |the form|at in wh|
|00005cb0| 69 63 68 20 74 68 65 20 | 73 65 61 72 63 68 20 72 |ich the |search r|
|00005cc0| 65 73 75 6c 74 73 20 61 | 72 65 20 61 72 72 61 6e |esults a|re arran|
|00005cd0| 67 65 64 2e 20 54 68 65 | 20 63 75 72 72 65 6e 74 |ged. The| current|
|00005ce0| 6c 79 20 73 65 6c 65 63 | 74 65 64 20 6f 70 74 69 |ly selec|ted opti|
|00005cf0| 6f 6e 20 69 73 20 69 6e | 64 69 63 61 74 65 64 20 |on is in|dicated |
|00005d00| 62 79 20 61 20 63 68 65 | 63 6b 20 6d 61 72 6b 2e |by a che|ck mark.|
|00005d10| 0d 0d 49 66 20 79 6f 75 | 20 63 68 6f 6f 73 65 20 |..If you| choose |
|00005d20| 53 6f 72 74 20 52 65 73 | 75 6c 74 73 20 62 79 20 |Sort Res|ults by |
|00005d30| 50 61 74 74 65 72 6e 2c | 20 74 68 65 6e 20 61 6e |Pattern,| then an|
|00005d40| 79 20 68 69 74 73 20 77 | 69 6c 6c 20 62 65 20 67 |y hits w|ill be g|
|00005d50| 72 6f 75 70 65 64 20 62 | 79 20 70 61 74 74 65 72 |rouped b|y patter|
|00005d60| 6e 73 2c 20 69 6e 20 74 | 68 65 20 6f 72 64 65 72 |ns, in t|he order|
|00005d70| 20 69 6e 20 77 68 69 63 | 68 20 74 68 65 20 70 61 | in whic|h the pa|
|00005d80| 74 74 65 72 6e 73 20 6f | 63 63 75 72 20 69 6e 20 |tterns o|ccur in |
|00005d90| 74 68 65 20 70 61 74 74 | 65 72 6e 20 64 61 74 61 |the patt|ern data|
|00005da0| 62 61 73 65 2e 0d 0d 49 | 66 20 53 6f 72 74 20 52 |base...I|f Sort R|
|00005db0| 65 73 75 6c 74 73 20 62 | 79 20 4c 6f 63 61 74 69 |esults b|y Locati|
|00005dc0| 6f 6e 20 69 73 20 73 65 | 6c 65 63 74 65 64 2c 20 |on is se|lected, |
|00005dd0| 6f 75 74 70 75 74 20 77 | 69 6c 6c 20 62 65 20 73 |output w|ill be s|
|00005de0| 6f 72 74 65 64 20 61 63 | 63 6f 72 64 69 6e 67 20 |orted ac|cording |
|00005df0| 74 6f 20 74 68 65 20 6f | 63 63 75 72 72 65 6e 63 |to the o|ccurrenc|
|00005e00| 65 73 20 6f 66 20 70 61 | 74 74 65 72 6e 73 20 61 |es of pa|tterns a|
|00005e10| 6c 6f 6e 67 20 74 68 65 | 20 73 65 71 75 65 6e 63 |long the| sequenc|
|00005e20| 65 2e 0d 0d 52 65 67 61 | 72 64 6c 65 73 73 20 6f |e...Rega|rdless o|
|00005e30| 66 20 77 68 69 63 68 20 | 6d 65 74 68 6f 64 20 79 |f which |method y|
|00005e40| 6f 75 20 63 68 6f 6f 73 | 65 2c 20 73 6f 72 74 69 |ou choos|e, sorti|
|00005e50| 6e 67 20 69 73 20 70 65 | 72 66 6f 72 6d 65 64 20 |ng is pe|rformed |
|00005e60| 66 6f 72 20 65 61 63 68 | 20 69 6e 70 75 74 20 73 |for each| input s|
|00005e70| 65 71 75 65 6e 63 65 20 | 69 6e 64 65 70 65 6e 64 |equence |independ|
|00005e80| 65 6e 74 6c 79 20 69 66 | 20 74 68 65 72 65 20 69 |ently if| there i|
|00005e90| 73 20 6d 6f 72 65 20 74 | 68 61 6e 20 6f 6e 65 20 |s more t|han one |
|00005ea0| 73 65 71 75 65 6e 63 65 | 20 69 6e 20 74 68 65 20 |sequence| in the |
|00005eb0| 73 65 71 75 65 6e 63 65 | 20 66 69 6c 65 2e 0d 0d |sequence| file...|
|00005ec0| 00 43 68 61 6e 67 65 73 | 20 6f 66 20 74 68 65 20 |.Changes| of the |
|00005ed0| 73 6f 72 74 20 6d 65 74 | 68 6f 64 20 63 6f 6d 65 |sort met|hod come|
|00005ee0| 20 69 6e 74 6f 20 65 66 | 66 65 63 74 20 66 6f 72 | into ef|fect for|
|00005ef0| 20 66 6f 6c 6c 6f 77 69 | 6e 67 20 73 65 61 72 63 | followi|ng searc|
|00005f00| 68 65 73 20 6f 6e 6c 79 | 2e 20 53 65 61 72 63 68 |hes only|. Search|
|00005f10| 20 72 65 73 75 6c 74 73 | 20 61 6c 72 65 61 64 79 | results| already|
|00005f20| 20 73 68 6f 77 6e 20 6f | 6e 20 74 68 65 20 73 63 | shown o|n the sc|
|00005f30| 72 65 65 6e 20 61 72 65 | 20 6e 6f 74 20 61 66 66 |reen are| not aff|
|00005f40| 65 63 74 65 64 20 77 68 | 65 6e 20 74 68 65 20 73 |ected wh|en the s|
|00005f50| 6f 72 74 20 6d 65 74 68 | 6f 64 20 69 73 20 61 6c |ort meth|od is al|
|00005f60| 74 65 72 65 64 2e 0d 0d | a5 20 53 68 6f 77 20 45 |tered...|. Show E|
|00005f70| 6e 74 72 79 20 4e 61 6d | 65 20 61 6e 64 20 53 68 |ntry Nam|e and Sh|
|00005f80| 6f 77 20 41 63 63 65 73 | 73 69 6f 6e 20 4e 6f 0d |ow Acces|sion No.|
|00005f90| 0d 54 68 65 73 65 20 63 | 6f 6d 6d 61 6e 64 73 20 |.These c|ommands |
|00005fa0| 63 6f 6e 74 72 6f 6c 20 | 74 68 65 20 77 61 79 20 |control |the way |
|00005fb0| 61 20 70 61 74 74 65 72 | 6e 20 64 61 74 61 62 61 |a patter|n databa|
|00005fc0| 73 65 20 66 69 6c 65 20 | 69 73 20 64 69 73 70 6c |se file |is displ|
|00005fd0| 61 79 65 64 20 69 6e 20 | 61 20 64 61 74 61 62 61 |ayed in |a databa|
|00005fe0| 73 65 20 62 72 6f 77 73 | 65 72 20 77 69 6e 64 6f |se brows|er windo|
|00005ff0| 77 2e 20 54 68 65 20 63 | 75 72 72 65 6e 74 6c 79 |w. The c|urrently|
|00006000| 20 73 65 6c 65 63 74 65 | 64 20 6f 70 74 69 6f 6e | selecte|d option|
|00006010| 20 69 73 20 69 6e 64 69 | 63 61 74 65 64 20 62 79 | is indi|cated by|
|00006020| 20 61 20 63 68 65 63 6b | 20 6d 61 72 6b 2e 0d 0d | a check| mark...|
|00006030| 49 66 20 53 68 6f 77 20 | 45 6e 74 72 79 20 4e 61 |If Show |Entry Na|
|00006040| 6d 65 20 69 73 20 63 68 | 6f 73 65 6e 2c 20 74 68 |me is ch|osen, th|
|00006050| 65 20 65 6e 74 72 79 20 | 6e 61 6d 65 20 6f 66 20 |e entry |name of |
|00006060| 65 61 63 68 20 64 61 74 | 61 62 61 73 65 20 65 6e |each dat|abase en|
|00006070| 74 72 79 20 69 73 20 73 | 68 6f 77 6e 20 69 6e 20 |try is s|hown in |
|00006080| 74 68 65 20 62 72 6f 77 | 73 65 72 2e 20 49 66 20 |the brow|ser. If |
|00006090| 53 68 6f 77 20 41 63 63 | 65 73 73 69 6f 6e 20 4e |Show Acc|ession N|
|000060a0| 6f 20 69 73 20 73 65 6c | 65 63 74 65 64 2c 20 74 |o is sel|ected, t|
|000060b0| 68 65 20 63 6f 72 72 65 | 73 70 6f 6e 64 69 6e 67 |he corre|sponding|
|000060c0| 20 61 63 63 65 73 73 69 | 6f 6e 20 6e 75 6d 62 65 | accessi|on numbe|
|000060d0| 72 20 69 73 20 73 68 6f | 77 6e 20 69 6e 73 74 65 |r is sho|wn inste|
|000060e0| 61 64 2e 20 43 68 61 6e | 67 65 73 20 6f 66 20 74 |ad. Chan|ges of t|
|000060f0| 68 69 73 20 70 61 72 61 | 6d 65 74 65 72 20 63 6f |his para|meter co|
|00006100| 6d 65 20 69 6e 74 6f 20 | 65 66 66 65 63 74 20 69 |me into |effect i|
|00006110| 6d 6d 65 64 69 61 74 65 | 6c 79 20 61 6e 64 20 61 |mmediate|ly and a|
|00006120| 66 66 65 63 74 20 61 6c | 6c 20 70 61 74 74 65 72 |ffect al|l patter|
|00006130| 6e 20 64 61 74 61 62 61 | 73 65 20 62 72 6f 77 73 |n databa|se brows|
|00006140| 65 72 20 77 69 6e 64 6f | 77 73 20 63 75 72 72 65 |er windo|ws curre|
|00006150| 6e 74 6c 79 20 6f 70 65 | 6e 20 61 73 20 77 65 6c |ntly ope|n as wel|
|00006160| 6c 20 61 73 20 74 68 6f | 73 65 20 74 68 61 74 20 |l as tho|se that |
|00006170| 77 69 6c 6c 20 62 65 20 | 6f 70 65 6e 65 64 20 61 |will be |opened a|
|00006180| 66 74 65 72 77 61 72 64 | 73 2e 00 00 07 df 41 66 |fterward|s.....Af|
|00006190| 74 65 72 20 61 20 64 61 | 74 61 62 61 73 65 20 69 |ter a da|tabase i|
|000061a0| 6e 64 65 78 20 66 69 6c | 65 20 68 61 73 20 62 65 |ndex fil|e has be|
|000061b0| 65 6e 20 6c 6f 61 64 65 | 64 20 74 68 69 73 20 77 |en loade|d this w|
|000061c0| 69 6e 64 6f 77 20 64 69 | 73 70 6c 61 79 73 20 61 |indow di|splays a|
|000061d0| 20 6c 69 73 74 20 6f 66 | 20 61 6c 6c 20 74 68 65 | list of| all the|
|000061e0| 20 65 6e 74 72 69 65 73 | 20 69 6e 20 74 68 65 20 | entries| in the |
|000061f0| 64 61 74 61 62 61 73 65 | 2e 20 0d 0d 54 68 69 73 |database|. ..This|
|00006200| 20 77 69 6e 64 6f 77 20 | 69 73 20 6f 6e 6c 79 20 | window |is only |
|00006210| 76 65 72 74 69 63 61 6c | 6c 79 20 73 69 7a 65 61 |vertical|ly sizea|
|00006220| 62 6c 65 2e 20 59 6f 75 | 20 6d 61 79 20 73 63 72 |ble. You| may scr|
|00006230| 6f 6c 6c 20 74 68 72 6f | 75 67 68 20 74 68 65 20 |oll thro|ugh the |
|00006240| 6c 69 73 74 20 75 73 69 | 6e 67 20 74 68 65 20 73 |list usi|ng the s|
|00006250| 63 72 6f 6c 6c 20 62 61 | 72 20 6f 72 20 74 68 65 |croll ba|r or the|
|00006260| 20 73 70 65 63 69 61 6c | 20 6b 65 79 73 20 6f 6e | special| keys on|
|00006270| 20 61 6e 20 65 78 74 65 | 6e 64 65 64 20 4d 61 63 | an exte|nded Mac|
|00006280| 69 6e 74 6f 73 68 20 6b | 65 79 62 6f 61 72 64 2e |intosh k|eyboard.|
|00006290| 0d 0d 44 65 70 65 6e 64 | 69 6e 67 20 6f 6e 20 77 |..Depend|ing on w|
|000062a0| 68 65 74 68 65 72 20 79 | 6f 75 20 68 61 76 65 20 |hether y|ou have |
|000062b0| 63 68 6f 73 65 6e 20 53 | 68 6f 77 20 45 6e 74 72 |chosen S|how Entr|
|000062c0| 79 20 4e 61 6d 65 20 6f | 72 20 53 68 6f 77 20 41 |y Name o|r Show A|
|000062d0| 63 63 65 73 73 69 6f 6e | 20 4e 6f 20 66 72 6f 6d |ccession| No from|
|000062e0| 20 74 68 65 20 50 72 6f | 73 69 74 65 20 6f 72 20 | the Pro|site or |
|000062f0| 42 6c 6f 63 6b 73 20 6d | 65 6e 75 2c 20 74 68 65 |Blocks m|enu, the|
|00006300| 20 6c 69 73 74 20 77 69 | 6c 6c 20 64 69 73 70 6c | list wi|ll displ|
|00006310| 61 79 20 65 6e 74 72 79 | 20 6e 61 6d 65 73 20 6f |ay entry| names o|
|00006320| 72 20 61 63 63 65 73 73 | 69 6f 6e 20 6e 75 6d 62 |r access|ion numb|
|00006330| 65 72 73 20 6f 66 20 64 | 61 74 61 62 61 73 65 20 |ers of d|atabase |
|00006340| 65 6e 74 72 69 65 73 2e | 0d 0d 54 68 65 20 73 65 |entries.|..The se|
|00006350| 6c 65 63 74 69 6f 6e 20 | 6f 66 20 64 61 74 61 62 |lection |of datab|
|00006360| 61 73 65 20 65 6e 74 72 | 69 65 73 20 69 73 20 73 |ase entr|ies is s|
|00006370| 6c 69 67 68 74 6c 79 20 | 64 69 66 66 65 72 65 6e |lightly |differen|
|00006380| 74 20 66 72 6f 6d 20 74 | 68 65 20 73 74 61 6e 64 |t from t|he stand|
|00006390| 61 72 64 20 4d 61 63 69 | 6e 74 6f 73 68 20 73 65 |ard Maci|ntosh se|
|000063a0| 6c 65 63 74 69 6f 6e 20 | 74 65 63 68 6e 69 71 75 |lection |techniqu|
|000063b0| 65 73 2c 20 62 75 74 20 | 68 6f 70 65 66 75 6c 6c |es, but |hopefull|
|000063c0| 79 20 6d 6f 72 65 20 63 | 6f 6e 76 65 6e 69 65 6e |y more c|onvenien|
|000063d0| 74 20 66 6f 72 20 74 68 | 69 73 20 73 70 65 63 69 |t for th|is speci|
|000063e0| 61 6c 20 70 75 72 70 6f | 73 65 3a 0d 0d a5 20 53 |al purpo|se:... S|
|000063f0| 69 6e 67 6c 65 2d 63 6c | 69 63 6b 69 6e 67 20 61 |ingle-cl|icking a|
+--------+-------------------------+-------------------------+--------+--------+